Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02084 ATGGACCCAATACGTACCAACGAAGATGTTTTTCGAATTTATCTGCATGATTATCTGAAGAAGAAGGGATTGCACCACACTGCTGAAATTTTCCAAATTGAAGGCCGAGTTTCTAGACAACCTCCTGTTGAATTTGACCTAACTCCACATGGATTCCTGCACGATTGGTGGGTTTTCTTCTATGATGTGTTTAACTCTAGGCACCCGATGCCCGGATCCTCTAGTCAGGTTTTCATTTGCTACATGGATACCGGTGATGCTGTTACTACATTAGAAGCACATTCAGAACCCATCTCAGATGTTCGATTCCAACCAGGTTCAACAGTATTTGCAACTTCTTCCTCTGATAAAACTGTAAAAGTATGGGATGCAACCAAAGCCGGTGGACAAATAGTTAGATTTCAGCCTCAATTTGGGAGATTTTTGGCAGTTGCAAAAGGAAATGTTATCACCATACTTGATATTCAGAAATGGGCTGTTCAGTACCGTCTACAGGGACACATCAAAGATGTTCTTTCCTTTTGTTGGGATAAAACTGGAGAAATGATTGCCTCTGTTAGTGAAGACGGTGCACGTGTCTGGTCGGTTTTGGTGTGTGGATCTTGCATATATGAATTGCCATCGAATGGGAAGAGGTTTCATTCGATCATATTCCATCCTAGATACCATAATGTCGTACTTATTGGTGGTGATCAGCACCTGGAATTTTGGATTCCTGAAAGCGGGCAAATATATCCCATTACTGCCCATAATGGATCAATCACTGGACTAGCAGCTTCAACGCAAAATGAATATATTGCCTCAGCTAGTAGTGATCATTACGTGAGAATATGGAAATGA 840 0.4143 MDPIRTNEDVFRIYLHDYLKKKGLHHTAEIFQIEGRVSRQPPVEFDLTPHGFLHDWWVFFYDVFNSRHPMPGSSSQVFICYMDTGDAVTTLEAHSEPISDVRFQPGSTVFATSSSDKTVKVWDATKAGGQIVRFQPQFGRFLAVAKGNVITILDIQKWAVQYRLQGHIKDVLSFCWDKTGEMIASVSEDGARVWSVLVCGSCIYELPSNGKRFHSIIFHPRYHNVVLIGGDQHLEFWIPESGQIYPITAHNGSITGLAASTQNEYIASASSDHYVRIWK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02084 279 Gene3D - 133 279 IPR015943 GO:0005515
Rops2g02084 279 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 279 IPR001680 GO:0005515
Rops2g02084 279 Pfam LisH 16 34 IPR006594 GO:0005515
Rops2g02084 279 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 123 IPR001680 GO:0005515
Rops2g02084 279 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 279 - -
Rops2g02084 279 Gene3D - 56 132 IPR015943 GO:0005515
Rops2g02084 279 SMART WD40_4 157 195 IPR001680 GO:0005515
Rops2g02084 279 SMART WD40_4 199 238 IPR001680 GO:0005515
Rops2g02084 279 SMART WD40_4 84 123 IPR001680 GO:0005515
Rops2g02084 279 SMART WD40_4 240 279 IPR001680 GO:0005515
Rops2g02084 279 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 72 128 IPR044716 GO:0003714
Rops2g02084 279 SUPERFAMILY WD40 repeat-like 73 278 IPR036322 GO:0005515
Rops2g02084 279 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 91 123 - -
Rops2g02084 279 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 39 IPR006594 GO:0005515
Rops2g02084 279 Pfam WD domain, G-beta repeat 246 279 IPR001680 GO:0005515
Rops2g02084 279 Pfam WD domain, G-beta repeat 161 190 IPR001680 GO:0005515
Rops2g02084 279 Pfam WD domain, G-beta repeat 87 123 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02084 Rops-Chr2 33178886 33182210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02084 93 278 Miscellaneous Gene Families AT5G08390 24.500 2.74e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Rops2g02084 WD40 3.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02084 - - psat:127101304 292.737