Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02078 ATGGAGAACAACCCTAGTTCATCAAGAATTGATAGAAAATGCACTGAGAGGAATAGAAGAAATCAAATGAAGGCTCTCTACTTCAAGCTCAATTCAGTTGTGCCTCATCAAAGCTCAATGGAGGCAAAATCACTGCCAGATCAGATAGGTGAAGCCACAAACTACATAAAGTGTTTACAGATGAAGTTGGAGAAAATGAAGGAGAAGAAGAACAACCTACTAGGCATTGAAAGGTCAAAAGATGTTAGCATGAATAGAGGAATGGTTATAGGGTCAAAATTTCCACGATTTGAGATCCAACAAATGGGTTCAACCTTAGAAGTTGTTCTCATAACTGGGTTAGATTGTCAGTTCGTGTTTAGTGATACCATTCGTGTTCTTCATGAAGAAGGATCAGATATTGTTAATGCCAGTTACACAGTTGTTGAAAATGCAGTTTTCCGTACAATACACTGTCAGGTAAGAGAATCTGCCAATGAAGCTGCGAGGATTTCTGAGAAACTAAAGAAGTTTTTGTATCATTCTTCTGCCTTTTGA 537 0.3799 MENNPSSSRIDRKCTERNRRNQMKALYFKLNSVVPHQSSMEAKSLPDQIGEATNYIKCLQMKLEKMKEKKNNLLGIERSKDVSMNRGMVIGSKFPRFEIQQMGSTLEVVLITGLDCQFVFSDTIRVLHEEGSDIVNASYTVVENAVFRTIHCQVRESANEAARISEKLKKFLYHSSAF* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02078 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Rops2g02078 178 FunFam Transcription factor bHLH162 1 85 - -
Rops2g02078 178 Gene3D - 1 86 IPR036638 GO:0046983
Rops2g02078 178 Coils Coil 49 76 - -
Rops2g02078 178 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 172 - -
Rops2g02078 178 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Rops2g02078 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 73 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02078 Rops-Chr2 33015920 33016791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02078 3 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.889 3.79e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g02078 HLH 6.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02078 - - gmx:100810793 239.58