Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02065 ATGAGATCAAGAAAATCTCCAGAATACGAAGCTGTGGTACGTGCAGGCCCACACGTGCGACCCCTCCAACAAGCTCATGCTCATCTCATCGTCACAGGCTGTCACCGTAGCCGTGCCCTCCTCACCAAGCTCCTCACTCTATCTTGCGCCGCCGGTAAAATATCCTACACTCGCCGCCTCTTCTTCTCCGTCACCGACCCCGATTCCTTCCTCTTCAATTCCCTCATCAAAGCCTCCTCTCTCTCCCTCGATGCCATCCTCTTCTACCGTCACATGCTCCTCTCTCGTATCAAACCTTCCTCTTACACCTTCACCTCTCTCTTCAAAGCTTGCTCACATTTCTCCGCCCTCCGAATCGGTACCCTTCTTCATTCCCACGTTTTCGTTTCTGGGTATGCCTCTGATCCCTTTGTACAACCCGCAATTCTCACGTTTTACGCGAAATCAAACGCTCTGGATGTTGCTCGGAAGGTGTTTGATAAAATGCCCCAACGAAGTGTCGTTGCTTGGAACTCCATGATATCAGGGTATGAACAAAACGGGCTTCCCAATGAAGCGATTTTTCTGTTTCATAAGATGCATGAATATGGGGTTCGTCCTGATTCCGCAACTTTTGTCTCTTTATCATCTGCTTGCTCTCAAATGGGGTCTCTTGATTTGGGGTGTCGGGTGCATGATTGTGTCGTTAACAATGGGATTCGTGTTAACGTGATTCTTGGTACCTCGTTGATAAACATGTTTTCGCGGTGTGGTGATGTGAGAAGAGCACGTGCGGTTTTTGATTCGATGAATGAAGGGAATGTTGTAGCATGGACGGCTATGATATCAGGGTATGGTATACATGGTCATGGTGATGAAGCATTGGAACTTTTCCATCGAATGAAAGCACGTGGGCTAGTTCCTAATATTGTCACTTTTGTTGCTGTGTTATCTGCATGTGCTCATGCAGGGTTAATAAGTGAAGGGCGTCACGTGTTCGCAAGCATGAGAGAGGAGTATGGTGTGGTTCCAGGAGCGGAGCACCATGTTTGTATGGTTGATATGCTTGGCCGTGCTGGGTTGCTCAATGAAGCATATCACTTCATCAAAGAACTTAGCCCTGAGGAGCTTGTTCCTGCAGTGTGGACTGCAATGCTTGGTGCTTGCAAGATGCATAAGAATTTTGATCTTGGGGTGGAAGTAGCTGAGAATCTCATCTCTTTAGAGCCAGAGAATCCTGCCCATTATGTATTGCTTTCTAACATGTATGCATTGGAAGGAAGGATGGATAGAGTGGAATCTGTTAGAAATGTAATGATCCAAAGAGGCCTGAAAAAGCAAGTAGGTTATAGTACCATAGATGTCAATAACAAAACTTTCCTTTTTAGCATGGGTGACAAGTCCCACCCTGAGACTTATCAAATTTATCGTTATTTGGATGAGTTGATGTGGAGGTGTAAGGAAGCAGGTTATGCACCTGTTCCTGAATCGGCAATGCATGAGTTGGAAGATGAAGAGAGGGAGTATGCCCTCAGATACCATAGTGAGAAGCTTGCAGTAGCATTTGGGCTGATGAAAACGAGCCATGGGGTGACTCTCAGGATTGTCAAGAACCTTCGGATATGTGAAGATTGTCATTCAGCAATTAAGATAATCTCTGTTGTAACAAATAGAGAGATTATCATTCGGGATAAGCTTCGTTTCCATCATATTAGAGAAGGTTCTTGTTCTTGTTTAGATTATTGGTGA 1728 0.4543 MRSRKSPEYEAVVRAGPHVRPLQQAHAHLIVTGCHRSRALLTKLLTLSCAAGKISYTRRLFFSVTDPDSFLFNSLIKASSLSLDAILFYRHMLLSRIKPSSYTFTSLFKACSHFSALRIGTLLHSHVFVSGYASDPFVQPAILTFYAKSNALDVARKVFDKMPQRSVVAWNSMISGYEQNGLPNEAIFLFHKMHEYGVRPDSATFVSLSSACSQMGSLDLGCRVHDCVVNNGIRVNVILGTSLINMFSRCGDVRRARAVFDSMNEGNVVAWTAMISGYGIHGHGDEALELFHRMKARGLVPNIVTFVAVLSACAHAGLISEGRHVFASMREEYGVVPGAEHHVCMVDMLGRAGLLNEAYHFIKELSPEELVPAVWTAMLGACKMHKNFDLGVEVAENLISLEPENPAHYVLLSNMYALEGRMDRVESVRNVMIQRGLKKQVGYSTIDVNNKTFLFSMGDKSHPETYQIYRYLDELMWRCKEAGYAPVPESAMHELEDEEREYALRYHSEKLAVAFGLMKTSHGVTLRIVKNLRICEDCHSAIKIISVVTNREIIIRDKLRFHHIREGSCSCLDYW* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02065 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Rops2g02065 575 Pfam DYW family of nucleic acid deaminases 483 575 IPR032867 GO:0008270
Rops2g02065 575 FunFam Pentatricopeptide repeat-containing protein chloroplastic 221 320 - -
Rops2g02065 575 Pfam E motif 385 447 IPR046848 -
Rops2g02065 575 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Rops2g02065 575 Gene3D Tetratricopeptide repeat domain 23 116 IPR011990 GO:0005515
Rops2g02065 575 Gene3D Tetratricopeptide repeat domain 117 265 IPR011990 GO:0005515
Rops2g02065 575 Pfam Pentatricopeptide repeat domain 226 265 IPR002885 -
Rops2g02065 575 FunFam Pentatricopeptide repeat-containing protein At3g16610 78 220 - -
Rops2g02065 575 Gene3D Tetratricopeptide repeat domain 281 454 IPR011990 GO:0005515
Rops2g02065 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 337 IPR002885 -
Rops2g02065 575 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 165 512 IPR046960 GO:0003723|GO:0009451
Rops2g02065 575 FunFam Pentatricopeptide repeat-containing protein At2g33760 321 505 - -
Rops2g02065 575 Pfam PPR repeat family 267 314 IPR002885 -
Rops2g02065 575 Pfam PPR repeat family 166 212 IPR002885 -
Rops2g02065 575 NCBIfam pentatricopeptide repeat 168 202 IPR002885 -
Rops2g02065 575 NCBIfam pentatricopeptide repeat 304 338 IPR002885 -
Rops2g02065 575 NCBIfam pentatricopeptide repeat 269 303 IPR002885 -
Rops2g02065 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02065 Rops-Chr2 32818971 32821212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02065 50 575 Glycoside Hydrolase AT3G49170 38.879 2.64e-128 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02065 - - aprc:113859885 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02065 2 32818971 32821212 Rops2g02065 2 32818971 32821212 ECH