Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02062 ATGGCCTTTAATAACTATTTTTCTCAGGAATGGAGGAAAGCCATCCCAAATGCTGTGACTGAGACAGAAAATTATGATGGTTGTTTTGATTGCAACATCTGCTTAGACTTTGCTCATGAACCTGTAGTTACCCTCTGTGGCCACCTTTATTGCTGGCCTTGTATCTACAAGTGGCTCCATGTTCAAAGTGCTTCTCTTGCACCTGATGAACCCCCACAATGCCCTGTTTGTAAAGATGATATATCCCATACCACAGTGGTTCCTCTCTATGGTCGTGGCCATGCCCCAGCTCATAGTGACCATGATGGGAAGAAAACACCCTATAGAGATATTTTTATACCACCAAGACCACCTGCTTCAGGTGCTAAATCTCTATTAGCAACATCATCACAAAGTGGTCAACAGCTTCCATATCGTAATCCTTATCAGAATCAACATTTTAACCCTGGAGAAGAGGATGATGACAACACATCACAAATGCTCAATCTTGGTGCCACCATGACACCAGGATTCCCTAACCTTGTGGTTGGGATGTTCGGAGAGATCTTTTGTACCCGGATGTTTGGCAACTCTGAAAATTTACACACCTACCCGAATTCTTATTACCTTAATGGAAGTAGTAGTAGTCCTAGGTTGAGAAGGCAAGAGATGCTGGCAGACAAATCATTGAACAGAATTTCAATTTTTCTTCTTTGCTGCTTTCTTCTGTGTCTTATTGTCTTCTGA 726 0.4215 MAFNNYFSQEWRKAIPNAVTETENYDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEPPQCPVCKDDISHTTVVPLYGRGHAPAHSDHDGKKTPYRDIFIPPRPPASGAKSLLATSSQSGQQLPYRNPYQNQHFNPGEEDDDNTSQMLNLGATMTPGFPNLVVGMFGEIFCTRMFGNSENLHTYPNSYYLNGSSSSPRLRRQEMLADKSLNRISIFLLCCFLLCLIVF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02062 241 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 133 - -
Rops2g02062 241 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Rops2g02062 241 MobiDBLite consensus disorder prediction 95 109 - -
Rops2g02062 241 MobiDBLite consensus disorder prediction 123 147 - -
Rops2g02062 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops2g02062 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 91 IPR013083 -
Rops2g02062 241 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Rops2g02062 241 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Rops2g02062 241 SUPERFAMILY RING/U-box 25 90 - -
Rops2g02062 241 CDD RING-HC_AtRMA-like 29 78 - -
Rops2g02062 241 SMART ring_2 31 77 IPR001841 -
Rops2g02062 241 MobiDBLite consensus disorder prediction 92 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02062 Rops-Chr2 32782871 32784391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02062 2 227 C3H Transcription Factor Family AT4G27470 38.528 1.21e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02062 K10666 - gmx:100779793 365.54