Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02061 ATGGCGAGTCGGTTCGGTTTTTCTTCTTCCTCCGATTCGACTACGATGATCGTGACGAACACGCCTTCGCAGGAACTCGCCCTCACCAACCTCGCCTTCTGTTCCTCCTCCGATCTTCCAAAATTCGCCGTTCCCGCTCATGAAAGCATACGGAGTGGTCATATTGCGTTGAATTCTATTCAACGTCGATGTGCCAAAGTTTCTGCTGCTGAATCCGTAGCCGTGACCCGATTTGTGCCGCCTGAAAATTTCAACCTTGCACTGCTGACCCTTGAATTGGACTTCATTAAAAGAGTTGGAAATAGGAGTGAACAGATTGATGCAGTTGTACTGGCAAAGCAGCTTCGGAAGAGATTTAATAACCAGGTAATGACAGCAGGGCAGAAAGTGTTATTTGAGTATCATGGAAATAATTATAGCTTTACAGTCAGTCAAGCAGCTGTTGAGGGCCAAGAAAAGTCCAATTCTATTGAAAGAGGGATGATTTCAGATGACACATTCATTGTTTTTGAAACATCACGAGATAGTGGAATTAAGATTGTCAATCAGCGCGAGGGTGCCACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTCAGTCTCTGGGTATTGGTGGCCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCATGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGAACTGGAAAGACCCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTTAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTCAGGGACCTTTTTGCTGATGCTGAACAGGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGCATTGTGAACCAACTTCTTACAAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAATAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTATAGTGGCGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGATGATCTCACTAAGCAAGTGGAGGAGGAGAATATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCATGAAGTTATTCCTGCATTTGGAGCTTCCACTGATGACCTTGAAAGATGCAGACTCCATGGCATGGTGGACTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCTAGTGGCAGTGGTAAAACCGCACTTGCAGCTACTGTTGGTATTGACAGCGACTTCCCATATGTCAAGATAGTTTCAGCTGAGTCAATGATTGGTCTACATGAGAGCACTAAATGTTCCCAGATCATTAAGGTTTTCGAGGATGCATACAAGTCACCATTGAGTGTTATTATTCTTGATGACATTGAGAGGTTATTGGAGTATGTGGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTGGTCCTGCTTAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGTACGACAAGTCAACTGGGTTTCTTGGACTTAATTGGATTTTCTGATACTTTTGCTGTCACTTACCATGTTCCTACCTTGAACACAAGTGATGCAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGAAGATATCGATTCTGCTGCAGAGGCATTGAATGATATCTCTATCAGGAAGCTGTACATGTTGATTGAGATGGCGGCACAAGGAGCACAAGGCGGATCTGCAGAAGCTATCTATTCGGGCAAAGAGAAGATTAATATATCTCATTTCTATGATTGCCTCCAGGATGTTATCAGATTATAA 2184 0.419 MASRFGFSSSSDSTTMIVTNTPSQELALTNLAFCSSSDLPKFAVPAHESIRSGHIALNSIQRRCAKVSAAESVAVTRFVPPENFNLALLTLELDFIKRVGNRSEQIDAVVLAKQLRKRFNNQVMTAGQKVLFEYHGNNYSFTVSQAAVEGQEKSNSIERGMISDDTFIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIMHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKQVEEENIKVTMDDFLNALHEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCSQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSQLGFLDLIGFSDTFAVTYHVPTLNTSDAKKVLEQLNVFADEDIDSAAEALNDISIRKLYMLIEMAAQGAQGGSAEAIYSGKEKINISHFYDCLQDVIRL* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02061 727 Pfam AAA+ lid domain 407 462 IPR041569 -
Rops2g02061 727 Gene3D - 81 180 - -
Rops2g02061 727 Gene3D - 382 469 - -
Rops2g02061 727 Gene3D - 10 78 - -
Rops2g02061 727 PANTHER VESICULAR-FUSION PROTEIN NSF 14 726 IPR039812 GO:0016887|GO:0035494
Rops2g02061 727 Gene3D - 478 649 IPR027417 -
Rops2g02061 727 SUPERFAMILY ADC-like 12 78 IPR009010 -
Rops2g02061 727 Gene3D - 190 381 IPR027417 -
Rops2g02061 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 697 IPR027417 -
Rops2g02061 727 FunFam Vesicle-fusing ATPase 82 180 - -
Rops2g02061 727 Pfam Cell division protein 48 (CDC48), domain 2 105 150 IPR004201 -
Rops2g02061 727 SMART AAA_5 236 383 IPR003593 GO:0016887
Rops2g02061 727 SMART AAA_5 516 654 IPR003593 GO:0016887
Rops2g02061 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 479 IPR027417 -
Rops2g02061 727 CDD AAA 510 636 - -
Rops2g02061 727 CDD RecA-like_NSF-SEC18_r1-like 203 379 - -
Rops2g02061 727 Pfam ATPase family associated with various cellular activities (AAA) 521 630 IPR003959 GO:0005524|GO:0016887
Rops2g02061 727 Pfam ATPase family associated with various cellular activities (AAA) 240 380 IPR003959 GO:0005524|GO:0016887
Rops2g02061 727 FunFam Vesicle-fusing ATPase 382 469 - -
Rops2g02061 727 FunFam Vesicular-fusion ATPase SEC18 192 382 - -
Rops2g02061 727 SUPERFAMILY Cdc48 domain 2-like 81 185 IPR029067 -
Rops2g02061 727 FunFam vesicle-fusing ATPase isoform X1 478 649 - -
Rops2g02061 727 ProSitePatterns AAA-protein family signature. 351 369 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02061 Rops-Chr2 32757905 32774876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02061 231 447 Calmodulin-binding Proteins AT3G56690 38.914 5.34e-40 156