Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02021 ATGGACAGCACAGATTCATCATCAGGTTCTCAGTACCCTCAACTCCCTCCAGGGTTTCGGTTCCACCCCACAGATGAAGAACTCGTTGTTCACTACCTCAAGAGAAAAGCTGCATCTGCACCACTTCCTGTTACCATTATAGCAGAGGTTGATCTTTACAAGTTTGACCCTTGGGAACTCCCAAGTAAGGCAACGTTTGGTGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCGAATGGGGCGAGGCCAAACAGGGCTGCTACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGCATCAAAAAGTTGGAGTGAAGAAAGCACTTGTTTTTTATGGTGGGAAGCCTCCTAAAGGGGTTAAAACCAATTGGATCATGCATGAATATAGGCTTGTTGATAATTCCTTTAATTTAAGCTCAAAAACTCCTCCTCTGCCTGCTGATCCTCCAAATAGTAACAAGAAAAATTCTCTAAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAACACCACCATGCCAAGGCCACCCCTAATGGAGCATCATGATAAGGAGCTTTCAATGGAGACCATGCTACCAACTATGTCAACTTTGTCAATGGCTAATACTAATCAGAGTTCTAAACCTCCATCTTCGAGAAACACAAGTTATGGAACTGTCGGACTTGAAAATGATGACAACTTTTTTGATGGAATCTTAGCAGCTGATCAGAGCATGCAACAAAATGGTTCTGATTCTCACCTAGTCATCTCTCCAAACTCAAAGGGTAATAACTTCCCCATGAAACGTGCACTAACATCACAGTTTTGGGACGAGACAGGGTCTCCAGGGTCATCTTCTTCAAGCAAGCGATTCCATGGTGATCTTAATAGTGGAAACAGTGCAGCTGAGGAAAACAATTCCTTTGTTTCACTTCGTAGCCAGATTCCTCAGAATGCAACGTTTCATCCAAATTCGATTCTTGGGCCTGTTGGGGGTGGTGTCATGAGGCAACAATTTCAACTTCCTGGAATCAATTGGAACTAA 1071 0.4323 MDSTDSSSGSQYPQLPPGFRFHPTDEELVVHYLKRKAASAPLPVTIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVDNSFNLSSKTPPLPADPPNSNKKNSLRLDDWVLCRIYKKSNNTTMPRPPLMEHHDKELSMETMLPTMSTLSMANTNQSSKPPSSRNTSYGTVGLENDDNFFDGILAADQSMQQNGSDSHLVISPNSKGNNFPMKRALTSQFWDETGSPGSSSSSKRFHGDLNSGNSAAEENNSFVSLRSQIPQNATFHPNSILGPVGGGVMRQQFQLPGINWN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02021 356 ProSiteProfiles NAC domain profile. 15 182 IPR003441 GO:0003677|GO:0006355
Rops2g02021 356 SUPERFAMILY NAC domain 10 182 IPR036093 GO:0003677|GO:0006355
Rops2g02021 356 Gene3D NAC domain 24 187 IPR036093 GO:0003677|GO:0006355
Rops2g02021 356 MobiDBLite consensus disorder prediction 1 20 - -
Rops2g02021 356 MobiDBLite consensus disorder prediction 285 313 - -
Rops2g02021 356 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Rops2g02021 356 FunFam NAC transcription factor 56 24 187 - -
Rops2g02021 356 PANTHER NAC TRANSCRIPTION FACTOR 56 15 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02021 Rops-Chr2 32133557 32135170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02021 5 356 NAC Transcription Factor Family AT1G61110 53.699 9.97e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g02021 NAM 7.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02021 - - gmx:100797132 555.444