Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02014 ATGGCAGATGAGAACTTTGATTTTTCGGAACTGTTTCCTGGAGAGGAAAATGATGATGGCATGCTTTATATTGATATTCAAACCGTTATGAAGGTTCTCGATGAGGACGATCGTGATGAATCTCAGGAGAATAGTCCTGAGGATTATTCATCAAAAAATGTTTCACCCAGTGAATCTGGCACCCGTGTTTCTTTTCAGATTCAAAATGGGTCTCAAGTGTTAGAAGAACCTAATATTTCTAGGTTGGACTTGGTGGATTCAGTCACAAGCTGTTCTCCATTCTGTTCAGATGTGTCAGATTCTGGGGCCAGAGGTTCTGTTTGTTTATCTGATTCTGCAGCAAATTTTATGCTTGACTGTAAGCATGAAAACCAGGGACCTCAATCTCAGGCTTGCTCTTCCACAAATGCTTTTCCTTGTAGTTTCAGGGACTCATTCTCTTTGGGTGAAAGTGATGAGATTTGCTACACAAAGAGGACAGGAGTTTGTAAACATGAGATACCTGCTTATGGTGTGGAAACAAGTTTCCCTGAGGCACATCCATATAATATATCAGTTTATGGAGATAACTTAAATCTAAGTATGTGGAAGGGTGAGAATGAGAGCCAATTCAAGCATGTAGGAGAGGATGCTGAATCTGAACATGCTTCACTCAGTTCTATCATTGAGAATGGTGATGTAAATTTGGAAGATTATAACATCATTGGAGGAGTTTCTGGGCAACAGGAAAATGACTCATGTACATCTTTTGAAAAGTCAGTCATGGATGCTGATAGATCTTTGCATGTTGCAACTTCAACTAATTCTACTATTCATGGTTCCCACGTACCCAGTGATTTTTTTGACTACCATCCATCTTCAAATTGCTACCAGGGAACAGATGATAGAACCTTTGTTGCTGACTCATCTATTGGTAGTTTGCCTAATGGTATTTGCTCTCAACTATGGGCAAATGAAGAAACGATGAGTAACATGAAGGCAGAAAATGTGGAGTTCTATGCTGATATGGCGTGTATGAGTGGTGGCACACAATCAGGCACTACCGGGGAGATGTCTTTTCAAGATAGTCAAATTATGTTAGCAGATAGTCGTTATCCATCATTTTCTTCTGGTAATGTAATCTTTGATGACAAGACATCAGTGCCGCTTTCAACTTGTGCTTCATACATGTCATGTGGTGACCAGTCATTTTGTGTAAAAGGTGAAAGAGATAAAATTACACCTTACGAAAATAATTTTCACAATGATGTTGCGGGGTTCAATGTAGGCCTAGAGATGAAACAATTAACTGGTGTTTTTCCTTCTATGGGGTGTCAGAGTTATGAATGTTTTAAGAATGATGATGATTATGCCGTTAAAACATCTGAGATATCCAATCATTATCAATATATCATTGATGGAACTGCTGGTAATTTTCAAGGAAACATGGGCAATTTGAATTTAAAAGCTGTAGACAAATCTTTGCCCCTTGCCCAGGCACCAATTGCCAGTGAGATACAGTTTGGCTGTGTTAATAGAGGAGGGGTAAAAATGATACAACATAAACATATTGATTCTCATCTTTCAAAAGGAAATGCTGAGAATTTCCACGTTGAGGATGACTCTGATGTTTGCATTATCGAGGGCATCAGTCATCCTTCACTTACAAGTCAATCTGCAGGCATTGGAAATTCCCTCAGTATATCTCAATCTTCTAGATATGTTGATTCCCAGCCCTATATGGTTGGAAGCACAAGGCTGAAGACATATGATGAAAGAAATATATTACGAGTTGCTTTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGCCCACCAGATGGATTGTTGGCAGTTCCACTTTTAAGACATCAGAGAATTGCATTGTCATGGATGGTTCAGAAGGAAACATCAAGTTTATATTGCTCGGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAGACCGTGTCAACTATTGCATTAATATTGAAGGAAAGACCTTCAATACTTAGTGTGTGCCCTAATACCCAAAAAGGTGAACTAGAAACTTTGAATCTTGATGTGGATGATGACATGCTTCCCCAGAATGGTGGTGTGAAGAAAGAATCTAATGTGTGTCAGAGTATGTCAAGTAGATATCCAAGCAAAAGCATGAATTTGTTGGTGCAAGCAAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGTCCCACTAGTGTCTTGCGCCAATGGGATGAGGAGTTGCATAATAAGGTAACCAGCCTAGCAAATCTCTCGGTGCTAGTGTACCATGGAAGTAATCGAACGAAAGATCCTTATGAGGTGGCTAAGTATGATGTTGTCGTGACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGGTGAAGAAAAGGGAATTTTTGAAGATCATGCAGCGCCAAGTAGGAAAAGGAAAAACCCTTCTAAATCTACTAAAATTGGCAAGAAGGGATTGGACAGCACCATGCTTGAGGCTGTTGCTCGGCCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAAAACACAAGTTGCAAGGGCTTGTTGGGGTCTTCGTGCCAAGCGTAGATGGTGTTTGTCAGGGACTCCCATCCAGAATTCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATGCTGTCTATACGTCATTCTGTTCTACCATTAAGATCCCAATTAACAGAAACCCAACAAAGGGGTATAGAAAGCTACAAGCTGTCTTGAAGACGATTATGTTACGTCGGACCAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCTTGCCGCCTAAATTTGTAGAGCTGAAAAAAGTTGATTTTTCGAGGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCTCGTGCTCAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTTAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTGAAGCGTTACAATTCTAACTCTCTTGGGAGATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAAGAAAAACAATTCTCTCTTCTTAAACGTTTAGAGGCTTCCTTGGCTCTCTGCAGCATTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTGTGTGAGCATGTTTTCTGTAACCAGTGCATTTGTGAACATGTTACTGGTGATGACAAGCAGTGCCCTGTTACAAATTGCAAAAGTCAACTGAGCACATCTTCAGTGTTTTCCAAAGCCACACTGAACAGTTGTCTTTCGAACCAAGGTTGTGATTATTCGCCTGGTTCCACTGGTTCCGAAGTGGAAGAATTTGAGCCTTGGTCTCAGAGTCAGCCATATGATTCTTCAAAAATTAAGGCTGCACTGGAGGTATTGAAATCATTGTGTAAGCCACAGTGCGATACATCAAAAGGTATTTCTGTGCAGAGCAGTTTCATGGAAAATAATGACTGCCCTGGGAACACCTCTGTTGCTAACAATGCGAAACCCTTAAAGGATTCTCCTGAGAGTCAAAATTTGTCTGGGAATAGGAGTTCTGGTGATTCAGTTAGTCTTTTAGGGGAGAAAGCGATAGTTTTTTCTCAGTGGACGAGGATGCTAGATTTGCTGGAAGCATGTCTTAAGAATTCTTCAATTCAGTATAGAAGGCTTGATGGAACAATGTCCATTGCTCAGAGAGATAAAGCCGTTAAAGATTTTAATACTCTTCCTGAGGTATCGGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTAACTGTTCTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTCTAGCACTGCAGCAAAAGAAGCGAAAGATGGTTGCCTCTGCATTTGGGGAGGATGCCGGTGGTCGTCAGAGTCGCCTTACAGTGGATGATTTAAAATATTTGTTCATGATGTGA 4104 0.4101 MADENFDFSELFPGEENDDGMLYIDIQTVMKVLDEDDRDESQENSPEDYSSKNVSPSESGTRVSFQIQNGSQVLEEPNISRLDLVDSVTSCSPFCSDVSDSGARGSVCLSDSAANFMLDCKHENQGPQSQACSSTNAFPCSFRDSFSLGESDEICYTKRTGVCKHEIPAYGVETSFPEAHPYNISVYGDNLNLSMWKGENESQFKHVGEDAESEHASLSSIIENGDVNLEDYNIIGGVSGQQENDSCTSFEKSVMDADRSLHVATSTNSTIHGSHVPSDFFDYHPSSNCYQGTDDRTFVADSSIGSLPNGICSQLWANEETMSNMKAENVEFYADMACMSGGTQSGTTGEMSFQDSQIMLADSRYPSFSSGNVIFDDKTSVPLSTCASYMSCGDQSFCVKGERDKITPYENNFHNDVAGFNVGLEMKQLTGVFPSMGCQSYECFKNDDDYAVKTSEISNHYQYIIDGTAGNFQGNMGNLNLKAVDKSLPLAQAPIASEIQFGCVNRGGVKMIQHKHIDSHLSKGNAENFHVEDDSDVCIIEGISHPSLTSQSAGIGNSLSISQSSRYVDSQPYMVGSTRLKTYDERNILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPSILSVCPNTQKGELETLNLDVDDDMLPQNGGVKKESNVCQSMSSRYPSKSMNLLVQAKGRPSAGTLIVCPTSVLRQWDEELHNKVTSLANLSVLVYHGSNRTKDPYEVAKYDVVVTTYSIVSMEVPKQPLVDKDGEEKGIFEDHAAPSRKRKNPSKSTKIGKKGLDSTMLEAVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPTKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSREERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLGRSSVEMAKKLPQEKQFSLLKRLEASLALCSICNDPPEDAVVSVCEHVFCNQCICEHVTGDDKQCPVTNCKSQLSTSSVFSKATLNSCLSNQGCDYSPGSTGSEVEEFEPWSQSQPYDSSKIKAALEVLKSLCKPQCDTSKGISVQSSFMENNDCPGNTSVANNAKPLKDSPESQNLSGNRSSGDSVSLLGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSIAQRDKAVKDFNTLPEVSVIIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDAGGRQSRLTVDDLKYLFMM* 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02014 1367 CDD SF2_C_SNF 1213 1320 - -
Rops2g02014 1367 Gene3D - 951 1366 IPR027417 -
Rops2g02014 1367 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 629 898 IPR014001 -
Rops2g02014 1367 Pfam Helicase conserved C-terminal domain 1213 1310 IPR001650 -
Rops2g02014 1367 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 816 948 - -
Rops2g02014 1367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1036 1103 IPR013083 -
Rops2g02014 1367 SMART ultradead3 610 913 IPR014001 -
Rops2g02014 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 944 1366 IPR027417 -
Rops2g02014 1367 MobiDBLite consensus disorder prediction 1182 1207 - -
Rops2g02014 1367 SMART helicmild6 1227 1310 IPR001650 -
Rops2g02014 1367 Pfam SNF2-related domain 634 1013 IPR000330 GO:0005524|GO:0140658
Rops2g02014 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 936 IPR027417 -
Rops2g02014 1367 Gene3D - 709 798 IPR038718 -
Rops2g02014 1367 Gene3D - 805 937 IPR038718 -
Rops2g02014 1367 MobiDBLite consensus disorder prediction 47 62 - -
Rops2g02014 1367 Pfam Zinc finger, C3HC4 type (RING finger) 1052 1088 IPR018957 GO:0046872
Rops2g02014 1367 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1204 1362 IPR001650 -
Rops2g02014 1367 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 709 795 - -
Rops2g02014 1367 Gene3D - 583 674 IPR038718 -
Rops2g02014 1367 CDD DEXDc_SHPRH-like 614 936 - -
Rops2g02014 1367 MobiDBLite consensus disorder prediction 35 62 - -
Rops2g02014 1367 SUPERFAMILY RING/U-box 1049 1097 - -
Rops2g02014 1367 ProSitePatterns Zinc finger RING-type signature. 1067 1076 IPR017907 -
Rops2g02014 1367 SMART ring_2 1052 1090 IPR001841 -
Rops2g02014 1367 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 528 1366 - -
Rops2g02014 1367 ProSiteProfiles Zinc finger RING-type profile. 1052 1091 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02014 Rops-Chr2 31948987 31959126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02014 504 1366 RAD5 or RAD16-like Gene Family AT1G61140 59.659 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops2g02014 SNF2_N 5.8e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02014 - - gmx:100802436 2016.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02014 2 31948987 31959126 Rops11g00511 11 6976210 6992049 PCT