Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01977 ATGGGTGATGAAGAGTTGGCCGGAGAGTCCAAAACGGCGGAGTTACTCACCGGAGCTACCCTTCTCCGGCGAGCCTTGGAAATTATTTGTTCGGTGCTCTCTCTCACACACTCGATCAGGGTCTTCGCCGGAAAATGGAAACTCATTCGGAACAAGCTGGAAGAGCTTCACTCAGGTCTAATCGCCGCCGAGAACTGCGATTCAGGCGAGAACCCTTCACTTTCCCGGTTGGTGCCTTCGATAGTAGCCACCATGAAAGATTGCCACGATCTGGGTCAGCGTTGTGTTGATGTCTCTTACAGTGGGAAGCTCTTGATGCAAAGCGATTTGGACAGGGCCTTTGCGAAGCTCGATGGACTCGTGAAGAAGCTCTCTGAGATATACAAGAAGGGTATTTTGACAAATGGGCATGCGCTTGTGGTTTCAAAACCGAGTCTTGGAGCTTCCAAAGAGGATATGAGGTTCTATGTGAGGGACCTTTTGACTAGGATGAAGATTGGTGATTTGGATATGAAGAAACAAGCCTTGAGGAACCTTCTAGAGGTTGTGGTGGAGGATGATAAGTATGTTAAAGTGGTTGTGGATGCTGGTGATGTTGTTCATTTGTTGGTGGGTTTTCTTGGTTCAGCTGAGGTGGAAATCCAAGAGGAAAGTGCTAAGGTGGTTTCTGTTGTTGCTGGTTTTGATTCATATAAAGGGGTTTTGGTTGGTGCTGGGGTTATTGCTTCTTTGGTTCGGGTTTTGGATTGTGGGAGTGATTTGGGGAAGGTTGCGGCTGCAAGGTGTTTGATGAAGTTGACTGAGAATTCTGATAATGCTTGGTGTGTTTCGGCTCATGGGGGTGTCACTGCCTTGTTGAATATTTGTGGGAATGAAGATTGTAAAGGGGATTTGGTTGGTCCAGCTTGTGGGGTGTTGAGAAACCTTGTTGGTGTTGAGGAAATAAAGAGGTTTATGGTTGAGGAGGGTGCTGTGTCAACTTTTATCATGCTTGTGAAATCAAAGGAGGAAGCAATTCAGGTGAATTCCATAGGGTTCATTCAGAATATTGCCTCTGGAGATGAATTGGTTAGGCAGATGGTGATTAGAGAAGGTGGAATCTGTGCTTTGTTAAGTGTTTTGGATCCTAAGTGGTCTTATTCTTCTAAAACAAGGGAGATAGCAATGAGGGCTATTGAGAATTTGTGTTTTTCTTCATCTAGTTTTGTAAGTATTTTGATGAGTTATGGTTTTGTGGATCAGCTATTATATTATGTTAAAAATGGGGAGGTTTCAATTCAAGAGTTGGCTCTGAAAGTGGCATTTAGATTGTGTGGAACATCAGAGGAGGCTAAGAAAGCAATGGGTGATGCAGGTTTTATGCCAGAGCTTGTTAAGTTTCTAAGTGCAAAATCATTTGAAGTTCGTGAAATGGCAGCCGAGGCACTCTCTGGCTTGGTTATGGTACCTAGAAATAGAAAGAGATTTGTGCAAGATGACCATAATATAGCCCTTCTTCTGCAATTGCTTGACCCAGAAGAGGGAAATTCAAGTAACAAAAAGTTCTTAATCTCTATCTTAATGTCATTGACAAGTTGTAACAGTGGGAGGAAAAAGATTGTTAGTTCTGGATATGCCAAAAACATAGAAAAACTTGCTGGTGCTGAAGTCTCCTCTGATGCCAAGAGACTTGTCAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1731 0.4373 MGDEELAGESKTAELLTGATLLRRALEIICSVLSLTHSIRVFAGKWKLIRNKLEELHSGLIAAENCDSGENPSLSRLVPSIVATMKDCHDLGQRCVDVSYSGKLLMQSDLDRAFAKLDGLVKKLSEIYKKGILTNGHALVVSKPSLGASKEDMRFYVRDLLTRMKIGDLDMKKQALRNLLEVVVEDDKYVKVVVDAGDVVHLLVGFLGSAEVEIQEESAKVVSVVAGFDSYKGVLVGAGVIASLVRVLDCGSDLGKVAAARCLMKLTENSDNAWCVSAHGGVTALLNICGNEDCKGDLVGPACGVLRNLVGVEEIKRFMVEEGAVSTFIMLVKSKEEAIQVNSIGFIQNIASGDELVRQMVIREGGICALLSVLDPKWSYSSKTREIAMRAIENLCFSSSSFVSILMSYGFVDQLLYYVKNGEVSIQELALKVAFRLCGTSEEAKKAMGDAGFMPELVKFLSAKSFEVREMAAEALSGLVMVPRNRKRFVQDDHNIALLLQLLDPEEGNSSNKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAGAEVSSDAKRLVRKLSTNRFRSMLSGIWHS* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01977 576 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 575 - -
Rops2g01977 576 SUPERFAMILY ARM repeat 142 545 IPR016024 -
Rops2g01977 576 Gene3D - 156 565 IPR011989 -
Rops2g01977 576 SMART arm_5 312 352 IPR000225 GO:0005515
Rops2g01977 576 SMART arm_5 228 268 IPR000225 GO:0005515
Rops2g01977 576 SMART arm_5 354 397 IPR000225 GO:0005515
Rops2g01977 576 SMART arm_5 441 481 IPR000225 GO:0005515
Rops2g01977 576 SMART arm_5 269 311 IPR000225 GO:0005515
Rops2g01977 576 SMART arm_5 186 227 IPR000225 GO:0005515
Rops2g01977 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 324 IPR000225 GO:0005515
Rops2g01977 576 Pfam Armadillo/beta-catenin-like repeat 442 479 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01977 Rops-Chr2 31300700 31302851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01977 203 433 U-box Gene Family AT3G54790 26.068 1.11e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01977 - - gmx:100809382 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01977 2 31300700 31302851 Rops11g00473 11 6368631 6374645 PCT