Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01970 ATGGGTAGAGCACCTTGTTGTGACAAGAATGGACTTAAGAAAGGACCATGGACACCAGAGGAAGATCAGAAACTTGTTGATTACATTCAGCAACATGGGTATGGCAATTGGAGAATACTCCCAAAGAATGCAGGATTGCAAAGGTGTGGAAAAAGTTGCCGTCTCCGTTGGACAAACTATCTCCGACCAGATATAAAACGGGGTCGTTTTTCTTTTGAAGAGGAGGAGACAATAATACAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCTATTGCTTCTCGTTTACCAGGAAGGACAGACAATGAAATCAAGAATTACTGGAATACCCACATTAGAAAAAGGCTTCTAAGGATGGGAATTGATCCAGTGACACATAGTCCAAGGCTTGATCTTCTGGACCTCTCTTCTATTCTAAGTTCATCTCTCTATGGCTCATCACAATTGAACATCCAAAGGCTACTTGGCACTCAACCACTGGTGAACCCTGAGATTCTAAAGTTGGCTTCATCACTCTTCTCTCAGCAAAGTGAAGACCTCAACATGTGTGCACAAAATGGTCAAGAGAGTCAGCTCTGCAATCCCCAAATTCAGAACCAAATACCAAACTTTCCAGAAGCTTCTGGAGCAGCTTGCAGCACATTGAATACCACCCCTTGTGTTTCATTGCCTTTCACTCAAGAACAGTTTGTTGAATCCAATGTGAACACATACCCATCAAATTTCACTGACTTTGGCTTCCAACAACAAAGTGATTGGCATTGCAATGGAATTGCTTCCACTATGACAGAGGATTATGTCCCTCAATTACCAAGCTATAATTACTGCAATTCTGATTTTCATGCAAATGAACTTATGGACCCTTCAATGTCTGAAACCTCAACTTTCCATTCCAATAACAGCAACCAGAACATCAACTTCACTTCAGTTCTATCGACACCTTCTTCGAGTCCCACGCCATTGAATTCAAACTCCACGTATATCAATGGGAGCAGTACTGAGGATGAGACAGAAAGCTATGTCAGCAGTAACATATTGAGATTTCAAATCCCAGATTTCTTAGGGGTCAATGAGTTCATGTAA 1083 0.4164 MGRAPCCDKNGLKKGPWTPEEDQKLVDYIQQHGYGNWRILPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSLYGSSQLNIQRLLGTQPLVNPEILKLASSLFSQQSEDLNMCAQNGQESQLCNPQIQNQIPNFPEASGAACSTLNTTPCVSLPFTQEQFVESNVNTYPSNFTDFGFQQQSDWHCNGIASTMTEDYVPQLPSYNYCNSDFHANELMDPSMSETSTFHSNNSNQNINFTSVLSTPSSSPTPLNSNSTYINGSSTEDETESYVSSNILRFQIPDFLGVNEFM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01970 360 CDD SANT 69 112 IPR001005 -
Rops2g01970 360 CDD SANT 16 61 IPR001005 -
Rops2g01970 360 FunFam Transcription factor MYB39 69 130 - -
Rops2g01970 360 Gene3D - 13 66 - -
Rops2g01970 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g01970 360 MobiDBLite consensus disorder prediction 307 335 - -
Rops2g01970 360 Gene3D - 69 116 - -
Rops2g01970 360 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops2g01970 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g01970 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Rops2g01970 360 SMART sant 13 63 IPR001005 -
Rops2g01970 360 SMART sant 66 114 IPR001005 -
Rops2g01970 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g01970 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 287 - -
Rops2g01970 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Rops2g01970 360 FunFam MYB-related transcription factor 13 66 - -
Rops2g01970 360 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01970 Rops-Chr2 31166780 31168399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01970 1 360 MYB Transcription Factor Family AT4G21440 55.526 1.59e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g01970 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01970 K09422 - gmx:778071 512.686