Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01945 ATGGCAAGTCAGCTTCCAGAACACTTCAAATGTCCAATATCTCTAGAAATAATGTCGGACCCTGTGATCCTATGTTCGGGTCACACATTCGATCGATCCTCAATCCAACGGTGGTTAGACGCCGGACACAGGACATGTCCAATTACCAAAGTGCCCCTCCCTGACCACCCTTCCCTAATCCCAAACCACGCTCTAAGAAGCTTAATCTCCAACTACACACTCCTCTCCCCTCTCCACCAACACATTCCCCAACCCGAAACCCTAATTTCAACCCTCACCTCTCATTCTTCAACCTCCGATTCCAAAACCGAATCGCTCCGACAACTCACTCGCCTCTCCAAACGCGACGCCGCCTTCCGCCGTCGCCTTGTCGATTCCGGCGCCGTCTCCGCTGTTCTTTCCTGCCTCGATTGCTCCTCCGCCGGCGACCACGCGGTTCAGGAGAAGGCGATATCTTTGCTCCTCAACCTCAGCCTGGACGATGATTCCAAGGTTGGACTCGTCGCCGAGGGTGCAATCGCGCGCGTGGTGGCGGTCCTCCTCCGGGAAACCTCGCCGGATTGCCGTGCCGTGGCGGCGACGGTGATAACCAGCCTCGCCGTGGTGGAGGTGAACAAGGCCACGATCGGAGCTTTCCCTGGTGCCATCGGAGCTCTGGTGGCGATTCTCCGGGACGGGAAGGGGAGAGAGAGAAAAGAAGCGGCCACCGCGCTTTACGCGCTATGCTGTTTTCCGGTTAACCGGAGAAGAGCCGTGGATTGCGGTGCGGTGCCGATTCTGTTAAGGAGTGTAGATTCTGGGCTTGAAAGAGGTGTTGAGGTTATTGGTGTTTTGGCTAAGTGTAAGGAAGGTAGAGAACAAATGGAAAATTATCGTGGATGTGTGCGAATTCTGACACGTGTGTTGAGAAATGGAAGCTCAAGGGGGATTCAGTATGCACTGTTAGCACTCACTTCACTTTGTTTTCATAGCCAGCAAATGCTTCTGGAGGTCCTTCAAGAAGGGGTTCTGGAAATTTCTGTTGGGTTGCTGGAAGATGATAATGAGAAAGTGAGGAGAAATTCCTCCAATTTGATTCGGGTTCTCCGTGTTGATGATGGGAAGAATCAATTTTGA 1116 0.5287 MASQLPEHFKCPISLEIMSDPVILCSGHTFDRSSIQRWLDAGHRTCPITKVPLPDHPSLIPNHALRSLISNYTLLSPLHQHIPQPETLISTLTSHSSTSDSKTESLRQLTRLSKRDAAFRRRLVDSGAVSAVLSCLDCSSAGDHAVQEKAISLLLNLSLDDDSKVGLVAEGAIARVVAVLLRETSPDCRAVAATVITSLAVVEVNKATIGAFPGAIGALVAILRDGKGRERKEAATALYALCCFPVNRRRAVDCGAVPILLRSVDSGLERGVEVIGVLAKCKEGREQMENYRGCVRILTRVLRNGSSRGIQYALLALTSLCFHSQQMLLEVLQEGVLEISVGLLEDDNEKVRRNSSNLIRVLRVDDGKNQF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01945 371 Gene3D - 82 209 IPR011989 -
Rops2g01945 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Rops2g01945 371 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Rops2g01945 371 SUPERFAMILY RING/U-box 4 73 - -
Rops2g01945 371 Gene3D - 210 369 IPR011989 -
Rops2g01945 371 PANTHER U BOX DOMAIN-CONTAINING 5 360 - -
Rops2g01945 371 SMART arm_5 116 159 IPR000225 GO:0005515
Rops2g01945 371 SMART arm_5 281 322 IPR000225 GO:0005515
Rops2g01945 371 SMART arm_5 160 201 IPR000225 GO:0005515
Rops2g01945 371 SMART arm_5 324 364 IPR000225 GO:0005515
Rops2g01945 371 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Rops2g01945 371 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Rops2g01945 371 CDD RING-Ubox_PUB 6 55 IPR045210 -
Rops2g01945 371 SUPERFAMILY ARM repeat 86 363 IPR016024 -
Rops2g01945 371 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01945 Rops-Chr2 30621453 30623044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01945 1 362 U-box Gene Family AT4G21350 58.871 4.39e-143 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01945 - - gmx:100785141 535.413