Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01943 ATGATTCAAAAATTCTCTCTCTCATTTGTCCCATCATCTCGTTGTATTGTCAACCAGATTCCGCACGTAATTGAAGAAGCAAAGCTCAAAGATACAAACAAATCAGCAATTCTAACCATGGCTGAGGAGTTTCAAGCTAGGATTTGTGCTAATGATGCAGGAAACTATAGCACTCAGCAAACTGATACCATGGATTTGAAGGGAACTAGGTCTTGTGCTGAAGAGACTAATAATAATTTGGTTGCTGAGAGTTACCTGGGTTATTTTGATGCACAGAAGCCACAGAATAGTGAATCGGCCAGTGGAAGTGGTAGCATATTGATTGATTCCACCTTACAGATGATGGGTTTTGGCCTGACATCTTCAACTTCAACGAATTGGAATCAGCCTCTATTTCGTTGTAATGGAAGACCGGAGAGCAATTTCCATTCCATGCGTCAAGAAGCAACGGGTATAGATTCTTATAATTCACAAATTCAAAAGTATTGGTGCCCTAAGAGCTTTTCTTCTGATGTTCGAAATCAAGTTTCCACCATTGATACTTTCAAGCCAATGAACCAAGAATTTTCCTCAGATCAGCAGGGTCTGAGTTCTGTAACAAGCACTGTGTTATCAGATCGTGGTTTCCCAATTGGATCAGCCTCATATGGTTGCCCTTCAACGTTGATACAAAGCTTATATGACCCTGATCCTCAACCTCAACCACACCATTCACTTTTCACCAACCGTTCTATGTCCTATTCATCTAAAGCAAACTATGGGACATCCTCCAATGAACTACCTAAAGTCTCTCACTTTTTGAAGCCCTCACCAATAGCAAAGCAACACCCTATTGGACTTCACTTTTCCAATAATACTCCTTTCTGGAACGCTTCGGCCGAGGCACACATAAGAACCGGTGTTTTGGCTTCATCACAATCACAATATCAAACGCCAACTTTTGAAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGCTTAAGAGTGAAGAAACTCTTGACTCAGCATCAATGACAAAGAAAAATATTTATGAACCTGCATTCAAGAGGCCAAGAATTGAAACTCCATCCCCATTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGAGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCCGTTCTTCACGAAGCCATTGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTTTTGAGTACTCCATATATGAAAAATGGAGCTCCCATTCAACATCAGCAGGGGTGTGATGATGTTAAAGACTCAGAAGGGGTGAAACAAGATTTAAGAAGCCGAGGGCTTTGTTTGGTACCGATTTCAAGCACATTCCCAGTGACTACAGAAACCACTACTGAATTTTGGACACCTACATTCGGAGGCACACTCTTAAGGAGGAAGCAGCAAAAGCCACAGTCGGTGAAGGGAAAAGCTGAAGAGAACAAAAGATGA 1482 0.4177 MIQKFSLSFVPSSRCIVNQIPHVIEEAKLKDTNKSAILTMAEEFQARICANDAGNYSTQQTDTMDLKGTRSCAEETNNNLVAESYLGYFDAQKPQNSESASGSGSILIDSTLQMMGFGLTSSTSTNWNQPLFRCNGRPESNFHSMRQEATGIDSYNSQIQKYWCPKSFSSDVRNQVSTIDTFKPMNQEFSSDQQGLSSVTSTVLSDRGFPIGSASYGCPSTLIQSLYDPDPQPQPHHSLFTNRSMSYSSKANYGTSSNELPKVSHFLKPSPIAKQHPIGLHFSNNTPFWNASAEAHIRTGVLASSQSQYQTPTFEEKPNCPSTLLNKLKSEETLDSASMTKKNIYEPAFKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKNGAPIQHQQGCDDVKDSEGVKQDLRSRGLCLVPISSTFPVTTETTTEFWTPTFGGTLLRRKQQKPQSVKGKAEENKR* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01943 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 421 IPR036638 GO:0046983
Rops2g01943 493 CDD bHLH_AtbHLH_like 360 411 IPR045239 -
Rops2g01943 493 Gene3D - 364 423 IPR036638 GO:0046983
Rops2g01943 493 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 174 455 - -
Rops2g01943 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 403 IPR011598 GO:0046983
Rops2g01943 493 FunFam Transcription factor bHLH123 family 364 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01943 Rops-Chr2 30560464 30563150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01943 222 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 49.621 6.64e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01943 - - gmx:100784084 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01943 2 30560464 30563150 Rops11g00424 11 5727739 5730702 PCT