Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01895 ATGGAGATCTCATTCATCAATGGGTTACCTGATCAGGAAATAGTGGAGGATCCTAACTTTCTCCATCAGTGGCACTTGAGCTCTATGAATGAGCCTAGCTTACTGCCAATAGCTGCTGCCTTTGGAGAGACTCTACAACATCATTCATTCACTTATCCAAATTTCAACCTCAGAACTTCCATGGAAATTGCACTTGCTGACATTGAAAGACCCACAAAACATCTAAAAAAAACTGCTCAGACATCAGCAGAGACACCGTTTGTTTCTTGCCCAAATCTTCTTTCATTTGTGGATTCCAATCACATAAATCAGTTGGGATTAGACATGATATCTGAGGAAACATTTGGGAATCAAAACTATGTCTTGAAGACCTGCCAGGAGACCAAAAAGATAGGGACACGTGCTAAACTTTCTCAAACTCAAGATCACATTATGGCTGAAAGAAAGCGGCGAGAGAGGCTCAGCCAGCGGTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCCGTTCTTGGAGATGCTATCAAGTACTTGAAGCAATTGAAAGAGAAAGTGAGGGCTCTTGAGGAGGAACAGAACATGAAGAAAAATATGGAATCTGTGGTAGTTGTGAAGAAATCTCAACTATCCAATGATGTTGAAAACTCTTCTTCAGAATCTGGTGGTCCTTTTGATGAGGAGCTGCCTGAAATTGAGGCTAGATTTTGCAAGAAAAATGTCCTCGTAAGAGTTCACTGTGAGAAGAGTAAAGGAGTGGTAGAAAAAACAATCCAGGAAATTGAGAAACTCCATCTAAAAGTCACCAATAGCAGTGCCATGACATTTGGGAACTGTGCCCTTGATATAACAATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAACCTGCGTTCATCTTTTACCTCTTTCATGTGA 954 0.4109 MEISFINGLPDQEIVEDPNFLHQWHLSSMNEPSLLPIAAAFGETLQHHSFTYPNFNLRTSMEIALADIERPTKHLKKTAQTSAETPFVSCPNLLSFVDSNHINQLGLDMISEETFGNQNYVLKTCQETKKIGTRAKLSQTQDHIMAERKRRERLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLKEKVRALEEEQNMKKNMESVVVVKKSQLSNDVENSSSESGGPFDEELPEIEARFCKKNVLVRVHCEKSKGVVEKTIQEIEKLHLKVTNSSAMTFGNCALDITIIAQMDMEFCMTVKDLVRNLRSSFTSFM* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01895 317 CDD bHLH_AtNAI1_like 138 212 - -
Rops2g01895 317 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Rops2g01895 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 203 IPR036638 GO:0046983
Rops2g01895 317 Gene3D - 135 212 IPR036638 GO:0046983
Rops2g01895 317 SMART finulus 144 193 IPR011598 GO:0046983
Rops2g01895 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Rops2g01895 317 Coils Coil 177 207 - -
Rops2g01895 317 PANTHER BHLH TRANSCRIPTION FACTOR 40 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01895 Rops-Chr2 29743138 29747922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01895 138 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.738 4.53e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g01895 HLH 8.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01895 - - gmx:100799262 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01895 2 29743138 29747922 Rops2g01895 2 29743138 29747922 ECH
Rops2g01895 2 29743138 29747922 Rops11g00367 11 5004569 5021353 PCT