Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01878 ATGGGGAGAGGGAAGATTGCGATTCGAAGGATTGACAATACGAGTAGCAGGCAAGTGACATTTTCAAAGAGAAGAAAAGGATTGTTGAAGAAAGCTAGAGAACTATCCATTCTCTGTGATGCACAAGTTGGATTGATTGTGTTCTCCTCCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATAGAGCACTATAACAAACTAAAAGAGGACCATCATCAGTTAATGAATCCTACTTCAGAAGTCAAGTTTTGGCAAAGTGAAGCAGCAAGTTTGAGGCAACAACTGCAGCACTTGCACGAGTGCCACAGGCAACTGAAGGGTGAAGAACTTTCTGGTTTGGGTTTTAATGAGCTATGGGGTCTGGAAAATCAACTGAAGATGAGTTTGAAGAGCATTCGCACAAGAAAGGATCAAATTTATAGTGATGAGATCAAAGAATTACACCAAAAGGGAAGCCTCGGTCGTCAAGAAAATGAGGAACTTCATAAGAAGATAGACCTCATCCACAAGGAAAATACAGAACTACAGCAGGTTATTGAAGCACGGCGTACGGAAGAAGAAAATGCAACCTCCAATCCTCGCTATCAGCTATGGATATGA 615 0.4163 MGRGKIAIRRIDNTSSRQVTFSKRRKGLLKKARELSILCDAQVGLIVFSSTGKLYDYASTSMKSVIEHYNKLKEDHHQLMNPTSEVKFWQSEAASLRQQLQHLHECHRQLKGEELSGLGFNELWGLENQLKMSLKSIRTRKDQIYSDEIKELHQKGSLGRQENEELHKKIDLIHKENTELQQVIEARRTEEENATSNPRYQLWI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01878 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops2g01878 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops2g01878 204 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01878 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops2g01878 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops2g01878 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops2g01878 204 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Rops2g01878 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Rops2g01878 204 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Rops2g01878 204 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01878 204 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Rops2g01878 204 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Rops2g01878 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Rops2g01878 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01878 Rops-Chr2 29448194 29475365 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01878 1 198 MADS-box Gene Family AT2G14210 61.500 3.62e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops2g01878 K-box 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01878 K09264 - gmx:100808145 301.212