Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01875 ATGGGGAGAGGGAAGACTGTGATTCGAAGGATTGACAATACGACTAGCAGACAAGTGACATTTTCAAAGAGAAGAAAAGGATTGTTGAAGAAAGCTAGAGAACTATCCATTCTCTGTGATGCACAAGTTGGTTTGATTGTGTTCTCCTCCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATAGAGAACTATAACAAACTAAAAGAGGACTATCATCAGCTAATGAATCCTACTTCAGAAGTCAAGGTAACACAACTCATCGAAGCAGAAAGCTTGAAGCAACAACTGCAGCACTTGCACAAGTGCCACAGGCAACTGAAGGGCGAAGAACTTTCTGGTTTGGATTTTAATGAGCTACGGGGTCTGGAAAATCACCTGGAGATGTGTTTGAAGAGCATTCGCACAAGAAAGGATCAAATTTTTAGTGATGAGATCAAAGAATTACACCAAAAGGAAAGCTTCAGTTGTCAAGAAAATGAAGAGCTTCATAAGAAAATAAACCTCATCCATAAGGAAAATGCAGAACTACAGCAGGTTATTGAAGCAAGGCGTACAGAAGAAGAAAATTCAGCATCCAATCTTGCAAACTCTATCAGCTATGGATATGATATAATTGAGCCAATCAGTCTCCAGCTAAGCAAGCCCCAACCACAATACAACGAAGCACCTGCCCTCAAACTGATGATATAA 705 0.4028 MGRGKTVIRRIDNTTSRQVTFSKRRKGLLKKARELSILCDAQVGLIVFSSTGKLYDYASTSMKSVIENYNKLKEDYHQLMNPTSEVKVTQLIEAESLKQQLQHLHKCHRQLKGEELSGLDFNELRGLENHLEMCLKSIRTRKDQIFSDEIKELHQKESFSCQENEELHKKINLIHKENAELQQVIEARRTEEENSASNLANSISYGYDIIEPISLQLSKPQPQYNEAPALKLMI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01875 234 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Rops2g01875 234 Pfam K-box region 93 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01875 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops2g01875 234 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01875 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Rops2g01875 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Rops2g01875 234 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Rops2g01875 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops2g01875 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Rops2g01875 234 Coils Coil 164 194 - -
Rops2g01875 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops2g01875 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops2g01875 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops2g01875 234 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Rops2g01875 234 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01875 Rops-Chr2 29317846 29331977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01875 1 226 MADS-box Gene Family AT2G14210 55.066 5.55e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops2g01875 K-box 5.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01875 K09264 - gmx:100808145 300.441