Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01874 ATGGGGTTGGACGGAGTTGGAAGAAGGAAAGAGAAAGAAAAAGAGAAAGAAAAAGAGAGAAGGGGGAAGAAGGAAAAGAAAGAGAGAGAAAGAGAAGGAATAGTCACCGGTAAAGTTTTGCCCCACAAAACACTAAATTGCATCACAAACCTTCTTTCTTCTTCTGCTCCATCTTCTTCCAGTTTTCCTTTTAGTAATTTTCAAATTTGTTCATTGATATGCCCAAAGAAAAGAAGAAAATTTTCTGAAAGAACCCTAGTCAGCTTTGACATTTTTGGACTAAAGATGGGGAGAGGGAAGATTGCGATTCGAAGGATTGACAAGACGACTAGCAGGCAAGTGACATTTTCAAAGAGAAGAAAAGGATTGCTGAAGAAAGCTAGAGAGCTATCCATTCTCTGTGATGCACAAGTTGGATTGATTGTGTTCTCCTCCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTGTAGAGCACTATAACGAACTAAAAGAGGACCATCATCAGCTAAGGAATCATGCTTCAGAAGTCAAGGTAACACAACTCATCTTGAGGCAACAATTGCAACACTTGCACAAGTGCCACAGGCAACTGAAGGGCGAAGAACTTTCTGGTTTGGGTTTTAATGAGCTACGGGGTCTGGAAAATCATCTGGAGATGTGTTTGAAGAGCATTCGCACAAAAAAGGATCAAATTTTTAGTGATGAGATCAAAGAATTACACCAAAAGGAAAGCTTCAGTTGTCAAGAAAATGAAGAGCTTCATAAGAAAATAGACCTCATCCATAAGGAAAATGCAGAACTACAGCAGGTTAATGAAGCAAGGCGTAAGGAAGAAGAAAATTCAGCATCCAATCCTTCAAACTCTATCAGCTATGGATATGATATAGTTGACCCAATCAGTCTCCAGCTAAGCAAGCCCCAATCACAATACAACGAACCACCTGCCCTCAAACTGATGATATAA 978 0.3998 MGLDGVGRRKEKEKEKEKERRGKKEKKEREREGIVTGKVLPHKTLNCITNLLSSSAPSSSSFPFSNFQICSLICPKKRRKFSERTLVSFDIFGLKMGRGKIAIRRIDKTTSRQVTFSKRRKGLLKKARELSILCDAQVGLIVFSSTGKLYDYASTSMKSVVEHYNELKEDHHQLRNHASEVKVTQLILRQQLQHLHKCHRQLKGEELSGLGFNELRGLENHLEMCLKSIRTKKDQIFSDEIKELHQKESFSCQENEELHKKIDLIHKENAELQQVNEARRKEEENSASNPSNSISYGYDIVDPISLQLSKPQSQYNEPPALKLMI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01874 325 ProSiteProfiles K-box domain profile. 178 268 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01874 325 SUPERFAMILY SRF-like 97 177 IPR036879 GO:0003677|GO:0046983
Rops2g01874 325 Pfam K-box region 180 262 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01874 325 Gene3D - 109 186 IPR036879 GO:0003677|GO:0046983
Rops2g01874 325 MobiDBLite consensus disorder prediction 1 32 - -
Rops2g01874 325 FunFam MADS-box transcription factor MADS-MC 108 180 - -
Rops2g01874 325 PRINTS MADS domain signature 133 154 IPR002100 GO:0003677|GO:0046983
Rops2g01874 325 PRINTS MADS domain signature 98 118 IPR002100 GO:0003677|GO:0046983
Rops2g01874 325 PRINTS MADS domain signature 118 133 IPR002100 GO:0003677|GO:0046983
Rops2g01874 325 Coils Coil 255 285 - -
Rops2g01874 325 CDD MADS_MEF2_like 97 173 IPR033896 GO:0000977|GO:0045944
Rops2g01874 325 SMART madsneu2 96 155 IPR002100 GO:0003677|GO:0046983
Rops2g01874 325 Coils Coil 9 30 - -
Rops2g01874 325 ProSiteProfiles MADS-box domain profile. 96 156 IPR002100 GO:0003677|GO:0046983
Rops2g01874 325 PANTHER SERUM RESPONSE FACTOR HOMOLOG 98 277 - -
Rops2g01874 325 ProSitePatterns MADS-box domain signature. 98 152 IPR002100 GO:0003677|GO:0046983
Rops2g01874 325 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 105 152 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01874 Rops-Chr2 29286725 29305254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01874 96 312 MADS-box Gene Family AT2G14210 56.306 5.76e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops2g01874 K-box 7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01874 K09264 - gmx:100808145 292.352