Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01858 ATGGCTTCTTTGTGGTTTCTCAAACTGGCTCTCAAATGTTTTGATCATTTAGCATGGCCTCTTCTTGCTCTGGTGTATCCTATGTGTGCTTCAGTGCAAGCAATCGAGACTGGTTCCTATACAGAAACTAGGAGTTTGATCTCATATTGGATCCTTCTCTCATTAATATACCTCTTTGAGTATGCTTTTATGTGGCTTCTTCAATGGTTCCAGTTCTGGCCTTACATTAAGCTAATGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCATATGTCTACAATAACCTTATTTGCTCCTGCATCACCATGAAACCACAGACTGTCATATTCAGGTTAAATAACTGGAAGAAGTTTTGTGTCAAGAAAGGAAACTTCTTACAGCAAGCAGAGAGATATGTAAAAGAGAATGGAACTGAAACCTTGGAGAAACTCATTGCCAGCAAGAACACAACTTATAAACCTGATACAAAAGCAACAACTGCAATTAGAGCTACTGATAATAAAGAAATGCAACAGAACACAACTTATAAACCTGATACAAAAGCAACAACTACAATTAGAGCCACTGATAATACAGAAATGCAACAGAACACAACTTATAAACCTGATACAAAAGCAACAACTGCAATTAGAGCTACTGATAATAAAGAAATGCAACAGAACACAACTTATAAACCTGATACAAAAGCAACAACTGCAATTAGAGCTACTGATAATAAAGAAATGCAACAGACAGATGGTAAAAGGCTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGGTTACTGAGAAAAAAGAAATTCCTACGGCCAAGCAAGATATCCCTGTCATGCCTAACCTTGAGCCAAATCAAAGCACTTTTTCAGCCACTGTGGAAATTAAAGGAATTGCAGGGAAAGACACAGCTGGTGGAGAGCTTCCTCAGAGTTCTACTCATAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTCAGGTAACAACTAGTAGCGAGAACAACTTGAATTCCCACCTGCATGGAATGAAACACAGGGCTGCTTATGAAGCTTTGAAAGCAAAGAATCAACCTACTCCACAGAAGCTGAAAATCAAATTAAAATGTGAAGTCTGTAATATTTTCGTTCCTGGTGAGGTTTACATGGCCTCTCACTTAAAAGGGAGGAAACACAGGGCTGCTTATGAAGCTTTGAATGCAAAGAATCAACCTACTCCACAGAAGCTGAAAATCAAATTAAAATGTAAAGTATGTAATATTATCCTTCAGAGTGTGGTTGACATGGCCTCTCACTTAAAAGGGAGGAAGCACTTGGATAAAATTTCAAATTTGAAAGTGTAA 1347 0.3823 MASLWFLKLALKCFDHLAWPLLALVYPMCASVQAIETGSYTETRSLISYWILLSLIYLFEYAFMWLLQWFQFWPYIKLMIIFWLIIPDFGRASYVYNNLICSCITMKPQTVIFRLNNWKKFCVKKGNFLQQAERYVKENGTETLEKLIASKNTTYKPDTKATTAIRATDNKEMQQNTTYKPDTKATTTIRATDNTEMQQNTTYKPDTKATTAIRATDNKEMQQNTTYKPDTKATTAIRATDNKEMQQTDGKRLQTEHKDIKDLEVTEKKEIPTAKQDIPVMPNLEPNQSTFSATVEIKGIAGKDTAGGELPQSSTHKEVQKEWTCALCQVTTSSENNLNSHLHGMKHRAAYEALKAKNQPTPQKLKIKLKCEVCNIFVPGEVYMASHLKGRKHRAAYEALNAKNQPTPQKLKIKLKCKVCNIILQSVVDMASHLKGRKHLDKISNLKV* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01858 448 Pfam Zinc-finger of C2H2 type 370 393 - -
Rops2g01858 448 Pfam Zinc-finger of C2H2 type 416 439 - -
Rops2g01858 448 Pfam Zinc-finger of C2H2 type 323 347 - -
Rops2g01858 448 SUPERFAMILY beta-beta-alpha zinc fingers 312 360 IPR036236 -
Rops2g01858 448 SMART ZnF_U1_5 366 400 IPR003604 GO:0003676|GO:0008270
Rops2g01858 448 SMART ZnF_U1_5 412 446 IPR003604 GO:0003676|GO:0008270
Rops2g01858 448 SMART ZnF_U1_5 320 354 IPR003604 GO:0003676|GO:0008270
Rops2g01858 448 Gene3D Classic Zinc Finger 353 398 - -
Rops2g01858 448 Gene3D Classic Zinc Finger 308 352 - -
Rops2g01858 448 Gene3D Classic Zinc Finger 399 445 - -
Rops2g01858 448 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Rops2g01858 448 PANTHER OS06G0651300 PROTEIN-RELATED 293 406 - -
Rops2g01858 448 SMART c2h2final6 369 393 IPR013087 -
Rops2g01858 448 SMART c2h2final6 323 347 IPR013087 -
Rops2g01858 448 SMART c2h2final6 415 439 IPR013087 -
Rops2g01858 448 SUPERFAMILY beta-beta-alpha zinc fingers 415 446 IPR036236 -
Rops2g01858 448 SUPERFAMILY beta-beta-alpha zinc fingers 369 405 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01858 Rops-Chr2 28999685 29006130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01858 322 443 C2H2 Transcription Factor Family AT2G19380 21.302 2.84e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01858 - - tpra:123912784 377.481