Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01857 ATGGCTTCTTTGTGGTTTCTCAAACTGGCTCTCAAATGTTTTGATCATTTAGCATGGCCTCTTCTTGCTCTGGGGTATCCTATGTGTGCTTCAGTGCAAGCAATCGAGACTGATTCCTATACAGAAACTAGGAATTTGATCTCATATTGGATCCTTCTCTCATTAATATACCTCTTTGAGTATGCTTCTATGAGGCTTCTTCAATGGTTCCAGTTCTGGCCTTACATTAAGCTAGTGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCATATGTCTACAATAACCTTATTTGCTCCTGCTTCTCCATGAAACCACAGACAGTCATATTCAGGTTAAATAACTGGAAGAAGTTTTCTGTCAAGAAAGAAAACTTCTTACAGCAAGCAGAGAGATATGTAAAAGAGAATGGAACTGAAGCCTTGGAGAAACTCATTGCTAGTAAGAGCACAACTTATAAACCTGATACAGAAGCAACAACTGCAATTAGAGCTACTGATATTAAAGAACAGATAGATGGAAAAAGGCTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGATTATTGAGAAAAAAGAAATTCCTATGGGCAAGCAAGATATCCCTGTCGTGCCTAACCTTGAGCCATGTCAAAACACTTCATCAGCCACTGTGGAAACTAAAGGAGTTGCAGGGAAAGGCACAGCTGGTGGAGAGCTTCCTCGAAGTTCTACTCATAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTCAGGTAACAACTTCAAGCGAGAACAACTTGAATTCCCACCTGCATGGAAGGAAACACAGGGCTGCTTATGAAGCTTTGAAAGCAAAGAATCAACCTACGCCACAGAAGATGAAAATCTCAGAGTCCAAAGAGGAATTGAAACAGAAGAACATTAGCAATCAGCTGAAGAATGGAGACATTATTGTTAACGACGGGTTGACTTCATGGATCATAAATAAGAAGGTGCAAGAACTGAAAAAGAACATTTCTGAACCTGTTAGGATGAATAATTCCAATTTAAAATGTGAAGTATGTAATATTATCCTTCATAGTGAGGCTAACATGGCCTCTCACTTAAAAGGGAGGAAGCACTTGGCTAAAATTTCAAATTTGAAAGTGTAA 1143 0.3937 MASLWFLKLALKCFDHLAWPLLALGYPMCASVQAIETDSYTETRNLISYWILLSLIYLFEYASMRLLQWFQFWPYIKLVIIFWLIIPDFGRASYVYNNLICSCFSMKPQTVIFRLNNWKKFSVKKENFLQQAERYVKENGTEALEKLIASKSTTYKPDTEATTAIRATDIKEQIDGKRLQTEHKDIKDLEIIEKKEIPMGKQDIPVVPNLEPCQNTSSATVETKGVAGKGTAGGELPRSSTHKEVQKEWTCALCQVTTSSENNLNSHLHGRKHRAAYEALKAKNQPTPQKMKISESKEELKQKNISNQLKNGDIIVNDGLTSWIINKKVQELKKNISEPVRMNNSNLKCEVCNIILHSEANMASHLKGRKHLAKISNLKV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01857 380 PANTHER OS06G0651300 PROTEIN-RELATED 225 378 - -
Rops2g01857 380 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Rops2g01857 380 Gene3D Classic Zinc Finger 324 377 - -
Rops2g01857 380 Gene3D Classic Zinc Finger 235 279 - -
Rops2g01857 380 Pfam Zinc-finger of C2H2 type 249 273 - -
Rops2g01857 380 Pfam Zinc-finger of C2H2 type 348 371 - -
Rops2g01857 380 SUPERFAMILY beta-beta-alpha zinc fingers 233 286 IPR036236 -
Rops2g01857 380 SMART c2h2final6 249 273 IPR013087 -
Rops2g01857 380 SMART c2h2final6 347 371 IPR013087 -
Rops2g01857 380 ProSitePatterns Zinc finger C2H2 type domain signature. 349 371 IPR013087 -
Rops2g01857 380 MobiDBLite consensus disorder prediction 215 241 - -
Rops2g01857 380 SMART ZnF_U1_5 246 280 IPR003604 GO:0003676|GO:0008270
Rops2g01857 380 SMART ZnF_U1_5 344 378 IPR003604 GO:0003676|GO:0008270
Rops2g01857 380 SUPERFAMILY beta-beta-alpha zinc fingers 337 378 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01857 Rops-Chr2 28993234 28998441 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01857 248 379 C2H2 Transcription Factor Family AT5G61190 30.000 7.17e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01857 - - gmx:100812073 477.633