Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01848 ATGGATAGGGTGAATATGCAGGTGGATGGGGTCCACTATGCCAATGGAGGAGCTTCAGGTTCCGCTGATGAAAGGGAAGAACCTCCTCCTTCTGTTGTGCACCCTCGCACCAGTGAACTCACCATTTCCTTTGAAGGCGAGGTTTATGTTTTCCCTGCTGTTACACCAGAAAAGGTGCAGGCTGTGTTATTACTATTGGGAGGGCAAGAGATGCCTAATAGTGTCCCCACCTCTGATTTTTTGCTGCAGCAAAACTCTCAGGACATTAGGGGAATGAATGATCCTTCCAGAAGTTCAAAGATTTCAAGGAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATTCGATACACTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGACTACAAATCTCCTGCTGAAAACCAGGATTCTAGCAATGGTACTCCTTGCCCAGAATCCACTGAACGTAGATGCCTGCATTGTGGAATAAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCGGCTGGTCCAAGATCTCTGTGCAATGCCTGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCTGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACTACAGAACCAGAAAATTCTTGTGCTGACCAAGGCAAGGAGGGAAGCCCTGAGGAAACTAAGCCTGTACCAGTGGATTCTAGACAGTCACCTGATAAGAAAAATGAGCAGTATATACTCGAGACTGCTGAAGCAGTTACTGACGACTTGTCCATCCAAGCAGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACTATTGAGGACCTTGCTGATGCTTCTGGGACTGAATTTGAGATTCCTGCAGGTTTTGATGATCAGGTTGATATTGATGATTCCAACATGAGGACTTACTGGCTGTGA 1008 0.4514 MDRVNMQVDGVHYANGGASGSADEREEPPPSVVHPRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGQEMPNSVPTSDFLLQQNSQDIRGMNDPSRSSKISRRFASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSPAENQDSSNGTPCPESTERRCLHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIAFEQNELDTSADIKPSTTEPENSCADQGKEGSPEETKPVPVDSRQSPDKKNEQYILETAEAVTDDLSIQAENHALSLHEQDTIEDLADASGTEFEIPAGFDDQVDIDDSNMRTYWL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01848 335 CDD ZnF_GATA 172 215 IPR000679 GO:0006355|GO:0043565
Rops2g01848 335 ProSiteProfiles GATA-type zinc finger domain profile. 167 224 IPR000679 GO:0006355|GO:0043565
Rops2g01848 335 MobiDBLite consensus disorder prediction 247 269 - -
Rops2g01848 335 ProSitePatterns GATA-type zinc finger domain. 173 200 IPR000679 GO:0006355|GO:0043565
Rops2g01848 335 Pfam GATA zinc finger 173 209 IPR000679 GO:0006355|GO:0043565
Rops2g01848 335 Gene3D - 166 225 IPR013088 GO:0006355|GO:0008270
Rops2g01848 335 PANTHER GATA TRANSCRIPTION FACTOR 28 15 314 IPR045280 GO:0006355
Rops2g01848 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 221 - -
Rops2g01848 335 ProSiteProfiles CCT domain profile. 104 146 IPR010402 GO:0005515
Rops2g01848 335 MobiDBLite consensus disorder prediction 228 244 - -
Rops2g01848 335 Pfam CCT motif 104 145 IPR010402 GO:0005515
Rops2g01848 335 SMART tify_2 33 68 IPR010399 -
Rops2g01848 335 ProSiteProfiles Tify domain profile. 33 68 IPR010399 -
Rops2g01848 335 SMART GATA_3 167 220 IPR000679 GO:0006355|GO:0043565
Rops2g01848 335 MobiDBLite consensus disorder prediction 226 269 - -
Rops2g01848 335 MobiDBLite consensus disorder prediction 139 170 - -
Rops2g01848 335 MobiDBLite consensus disorder prediction 1 35 - -
Rops2g01848 335 Pfam tify domain 35 67 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01848 Rops-Chr2 28863715 28869128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01848 39 216 Tify Gene Family AT1G51600 60.000 2.75e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops2g01848 CCT 7.8e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01848 - - gmx:102669848 550.051