Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01837 ATGGCCTATCTTTGCTTCCTTCCTATCACCCATTTCTGGAAGGCAAGGATTGGTTTACTCTTGGATATGACTAGGAAGAGGATACAGATCAAGAAAATTGACAACATCAGCTCCAACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCTAGTTCAAGTCTGCAACAAGTAATTGAAAGGCGTAGTCGACATTCAGCAATTCATAGATTGGACCACCCATCTATTGAGCTGCAGGTTGAGAATGACTCCAACAACACGCTGTGCAAGAAAGTAGAAGATAAGACTCGTGAGCTGAGGCAGTTGAATGGGGAAGAACTGCAAGGATTGACATTACAAGACCTCCAGAAGCTAGAGGAACTCCTTAAAAGAAGTTTGACTAGTGTTTCAAAAGTAAAGGATGAAAAATTTATGCAAGACATCAACACCCTTAAGAGAAAGGGAGTGGATCTGATTGAAGAAAACCAAAGATTGAAACAGGTACCAAGCCTTGTACATGGACAAATCATCTTGAGCTTGTTGGCTATTCTGACTCAGATTATGGCGGTTGACCTAATGACCATAAGTCCACATCAGAAGCACCAACTTGACCATAAAAGGAATGACCCCACCCTCACATCAGATATCTGTACTGGCATTAAAACGTATTTGGCAATTGGGAATAGTTGCTTCCTTCTTATCACCCATTTCTGGAAGGCAAGGATTGGTTTACTCTTGGATATGACTAGGAAGAGGATACAGATCAAGAAAATTGACAACATCAGCTCCAGGCAGGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTGTCAACTCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCTAGTTCAAGTCTGCAACAAGTAATTGAAAGGCGTAGTCGACATTCAGCAATTCATAGATTGGACCACCCATCTATTGAGCTGCAGGTTGAAAATGACTCCAACGACACGCTGTGCAAGAAAGTAGAAGATAAGACTCGTGAGCTGAGGCAGTTGAATGGGGAAGAACTGCAAGGATTGACATTACAAGACCTCCAGAAGCTAGAGGAACTCCTTAAAAGAAGTTTGACTAGTGTTTCAAAAGTAAAGGATGAAAAATTTATGCAAGACATCAACACCCTTAAGAGAAAGGGAGTGGATCTGATTGAAGAAAACCAAAGATTGAAACAGGTACCAAGCCTTGTACATGGACAAAGGCAATCACTGGAACCCATTATTAGCAGTTCATCTTATCTTACTGAAGACCATGGCAGTGACACATCTCTTCAGTTGGGGTTACCTTTACTTAAATAA 1356 0.4137 MAYLCFLPITHFWKARIGLLLDMTRKRIQIKKIDNISSNIALIVFSATSKLFEYASSSLQQVIERRSRHSAIHRLDHPSIELQVENDSNNTLCKKVEDKTRELRQLNGEELQGLTLQDLQKLEELLKRSLTSVSKVKDEKFMQDINTLKRKGVDLIEENQRLKQVPSLVHGQIILSLLAILTQIMAVDLMTISPHQKHQLDHKRNDPTLTSDICTGIKTYLAIGNSCFLLITHFWKARIGLLLDMTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSLQQVIERRSRHSAIHRLDHPSIELQVENDSNDTLCKKVEDKTRELRQLNGEELQGLTLQDLQKLEELLKRSLTSVSKVKDEKFMQDINTLKRKGVDLIEENQRLKQVPSLVHGQRQSLEPIISSSSYLTEDHGSDTSLQLGLPLLK* 452
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01837 451 ProSiteProfiles K-box domain profile. 329 422 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01837 451 Coils Coil 89 109 - -
Rops2g01837 451 Coils Coil 145 165 - -
Rops2g01837 451 SMART madsneu2 245 304 IPR002100 GO:0003677|GO:0046983
Rops2g01837 451 SMART madsneu2 23 57 IPR002100 GO:0003677|GO:0046983
Rops2g01837 451 ProSiteProfiles MADS-box domain profile. 245 305 IPR002100 GO:0003677|GO:0046983
Rops2g01837 451 Gene3D - 257 326 IPR036879 GO:0003677|GO:0046983
Rops2g01837 451 PANTHER SERUM RESPONSE FACTOR HOMOLOG 39 160 - -
Rops2g01837 451 Coils Coil 366 386 - -
Rops2g01837 451 MobiDBLite consensus disorder prediction 432 451 - -
Rops2g01837 451 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 254 301 IPR002100 GO:0003677|GO:0046983
Rops2g01837 451 SUPERFAMILY SRF-like 246 325 IPR036879 GO:0003677|GO:0046983
Rops2g01837 451 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01837 451 FunFam Transcription factor, MADS-box 257 326 - -
Rops2g01837 451 Coils Coil 119 139 - -
Rops2g01837 451 Coils Coil 336 356 - -
Rops2g01837 451 Pfam K-box region 337 411 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01837 451 Pfam K-box region 90 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01837 451 SUPERFAMILY SRF-like 25 78 IPR036879 GO:0003677|GO:0046983
Rops2g01837 451 ProSitePatterns MADS-box domain signature. 247 301 IPR002100 GO:0003677|GO:0046983
Rops2g01837 451 Gene3D - 35 78 IPR036879 GO:0003677|GO:0046983
Rops2g01837 451 CDD MADS_MEF2_like 247 321 IPR033896 GO:0000977|GO:0045944
Rops2g01837 451 Coils Coil 392 412 - -
Rops2g01837 451 PRINTS MADS domain signature 247 267 IPR002100 GO:0003677|GO:0046983
Rops2g01837 451 PRINTS MADS domain signature 267 282 IPR002100 GO:0003677|GO:0046983
Rops2g01837 451 PRINTS MADS domain signature 282 303 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops2g01837 Rops-Chr2 28686518 28706934 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01837 245 448 MADS-box Gene Family AT2G22540 45.570 2.32e-59 192
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops2g01837 K-box 2.7e-13 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01837 - - aprc:113860188 321.627