Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops2g01837 | ATGGCCTATCTTTGCTTCCTTCCTATCACCCATTTCTGGAAGGCAAGGATTGGTTTACTCTTGGATATGACTAGGAAGAGGATACAGATCAAGAAAATTGACAACATCAGCTCCAACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCTAGTTCAAGTCTGCAACAAGTAATTGAAAGGCGTAGTCGACATTCAGCAATTCATAGATTGGACCACCCATCTATTGAGCTGCAGGTTGAGAATGACTCCAACAACACGCTGTGCAAGAAAGTAGAAGATAAGACTCGTGAGCTGAGGCAGTTGAATGGGGAAGAACTGCAAGGATTGACATTACAAGACCTCCAGAAGCTAGAGGAACTCCTTAAAAGAAGTTTGACTAGTGTTTCAAAAGTAAAGGATGAAAAATTTATGCAAGACATCAACACCCTTAAGAGAAAGGGAGTGGATCTGATTGAAGAAAACCAAAGATTGAAACAGGTACCAAGCCTTGTACATGGACAAATCATCTTGAGCTTGTTGGCTATTCTGACTCAGATTATGGCGGTTGACCTAATGACCATAAGTCCACATCAGAAGCACCAACTTGACCATAAAAGGAATGACCCCACCCTCACATCAGATATCTGTACTGGCATTAAAACGTATTTGGCAATTGGGAATAGTTGCTTCCTTCTTATCACCCATTTCTGGAAGGCAAGGATTGGTTTACTCTTGGATATGACTAGGAAGAGGATACAGATCAAGAAAATTGACAACATCAGCTCCAGGCAGGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTGTCAACTCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCTAGTTCAAGTCTGCAACAAGTAATTGAAAGGCGTAGTCGACATTCAGCAATTCATAGATTGGACCACCCATCTATTGAGCTGCAGGTTGAAAATGACTCCAACGACACGCTGTGCAAGAAAGTAGAAGATAAGACTCGTGAGCTGAGGCAGTTGAATGGGGAAGAACTGCAAGGATTGACATTACAAGACCTCCAGAAGCTAGAGGAACTCCTTAAAAGAAGTTTGACTAGTGTTTCAAAAGTAAAGGATGAAAAATTTATGCAAGACATCAACACCCTTAAGAGAAAGGGAGTGGATCTGATTGAAGAAAACCAAAGATTGAAACAGGTACCAAGCCTTGTACATGGACAAAGGCAATCACTGGAACCCATTATTAGCAGTTCATCTTATCTTACTGAAGACCATGGCAGTGACACATCTCTTCAGTTGGGGTTACCTTTACTTAAATAA | 1356 | 0.4137 | MAYLCFLPITHFWKARIGLLLDMTRKRIQIKKIDNISSNIALIVFSATSKLFEYASSSLQQVIERRSRHSAIHRLDHPSIELQVENDSNNTLCKKVEDKTRELRQLNGEELQGLTLQDLQKLEELLKRSLTSVSKVKDEKFMQDINTLKRKGVDLIEENQRLKQVPSLVHGQIILSLLAILTQIMAVDLMTISPHQKHQLDHKRNDPTLTSDICTGIKTYLAIGNSCFLLITHFWKARIGLLLDMTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSLQQVIERRSRHSAIHRLDHPSIELQVENDSNDTLCKKVEDKTRELRQLNGEELQGLTLQDLQKLEELLKRSLTSVSKVKDEKFMQDINTLKRKGVDLIEENQRLKQVPSLVHGQRQSLEPIISSSSYLTEDHGSDTSLQLGLPLLK* | 452 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops2g01837 | 451 | ProSiteProfiles | K-box domain profile. | 329 | 422 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Rops2g01837 | 451 | Coils | Coil | 89 | 109 | - | - | |
Rops2g01837 | 451 | Coils | Coil | 145 | 165 | - | - | |
Rops2g01837 | 451 | SMART | madsneu2 | 245 | 304 | IPR002100 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | SMART | madsneu2 | 23 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | ProSiteProfiles | MADS-box domain profile. | 245 | 305 | IPR002100 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | Gene3D | - | 257 | 326 | IPR036879 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 39 | 160 | - | - | |
Rops2g01837 | 451 | Coils | Coil | 366 | 386 | - | - | |
Rops2g01837 | 451 | MobiDBLite | consensus disorder prediction | 432 | 451 | - | - | |
Rops2g01837 | 451 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 254 | 301 | IPR002100 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | SUPERFAMILY | SRF-like | 246 | 325 | IPR036879 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | ProSiteProfiles | K-box domain profile. | 82 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Rops2g01837 | 451 | FunFam | Transcription factor, MADS-box | 257 | 326 | - | - | |
Rops2g01837 | 451 | Coils | Coil | 119 | 139 | - | - | |
Rops2g01837 | 451 | Coils | Coil | 336 | 356 | - | - | |
Rops2g01837 | 451 | Pfam | K-box region | 337 | 411 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Rops2g01837 | 451 | Pfam | K-box region | 90 | 164 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Rops2g01837 | 451 | SUPERFAMILY | SRF-like | 25 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | ProSitePatterns | MADS-box domain signature. | 247 | 301 | IPR002100 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | Gene3D | - | 35 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | CDD | MADS_MEF2_like | 247 | 321 | IPR033896 | GO:0000977|GO:0045944 | |
Rops2g01837 | 451 | Coils | Coil | 392 | 412 | - | - | |
Rops2g01837 | 451 | PRINTS | MADS domain signature | 247 | 267 | IPR002100 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | PRINTS | MADS domain signature | 267 | 282 | IPR002100 | GO:0003677|GO:0046983 | |
Rops2g01837 | 451 | PRINTS | MADS domain signature | 282 | 303 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops2g01837 | Rops-Chr2 | 28686518 | 28706934 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops2g01837 | 245 | 448 | MADS-box Gene Family | AT2G22540 | 45.570 | 2.32e-59 | 192 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Rops2g01837 | K-box | 2.7e-13 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops2g01837 | - | - | aprc:113860188 | 321.627 |