Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01834 ATGACTAAAGAAAAAGATTTAATGGCTGTGGTACAGAAGCACCAACTTGACCATAAAAGGAATGACCCCACCCTCACATCTGATATCTGGACTGGCATTAAAACGTATTTGGCAATTGGGAATAGTTGCTTCCTTCCTATCATCCATTTCTGGAAGGCAAGGATTGGTTTACTCTTGGATATGACTAGGAAGAGGATACAGATCAAGAAAATTGACAACATCAGCTCCAGGCAGGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTGTCAACTCTTTGTGAGGCTGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTCTGAGTATGCTAGTTCAAGTCTGCAACAAGTAATTGAAAGGCGTAGTCGACATTCAGCAATTCATAGATTGGACCACCCATCTATTGAGCCGCAGGTTGAGAATGACTCCAACGACACGCTGTGCAAGAAAGTAGAAGATAAGACTCGTGAGCTGAGGCAGTTGAATGGGGAAGAACTGCAAGGATTGACATTACAAGACCTCCAGAAGCTAGAGGAACTCCTTAAAAGAAGTTTGACTAGTGTTTCAAAAGTAAAGGATGAAAAATTTATGCAAGACATCAACACCCTTAAGAGAAAGGGAGTGGATCTGATTGAAGAAAACCAAAGATTGAAACAGGTACCAAGCCTTGTACATGGACAAAGGCAATCACTGGAACCCATTATTAGCAGTTCATCTTATCTTACTGAAGACCATGGCAGTGACACATCACTTCAGTTGGGGTTACCTTTACTTAAATAA 804 0.4167 MTKEKDLMAVVQKHQLDHKRNDPTLTSDIWTGIKTYLAIGNSCFLPIIHFWKARIGLLLDMTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCEADIALIVFSATSKLSEYASSSLQQVIERRSRHSAIHRLDHPSIEPQVENDSNDTLCKKVEDKTRELRQLNGEELQGLTLQDLQKLEELLKRSLTSVSKVKDEKFMQDINTLKRKGVDLIEENQRLKQVPSLVHGQRQSLEPIISSSSYLTEDHGSDTSLQLGLPLLK* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01834 267 SMART madsneu2 61 120 IPR002100 GO:0003677|GO:0046983
Rops2g01834 267 ProSitePatterns MADS-box domain signature. 63 117 IPR002100 GO:0003677|GO:0046983
Rops2g01834 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 63 217 - -
Rops2g01834 267 Coils Coil 182 202 - -
Rops2g01834 267 CDD MADS_MEF2_like 63 137 IPR033896 GO:0000977|GO:0045944
Rops2g01834 267 SUPERFAMILY SRF-like 62 140 IPR036879 GO:0003677|GO:0046983
Rops2g01834 267 PRINTS MADS domain signature 63 83 IPR002100 GO:0003677|GO:0046983
Rops2g01834 267 PRINTS MADS domain signature 98 119 IPR002100 GO:0003677|GO:0046983
Rops2g01834 267 PRINTS MADS domain signature 83 98 IPR002100 GO:0003677|GO:0046983
Rops2g01834 267 Coils Coil 152 172 - -
Rops2g01834 267 FunFam Transcription factor, MADS-box 73 142 - -
Rops2g01834 267 ProSiteProfiles K-box domain profile. 145 238 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01834 267 MobiDBLite consensus disorder prediction 248 267 - -
Rops2g01834 267 Coils Coil 208 228 - -
Rops2g01834 267 Gene3D - 73 142 IPR036879 GO:0003677|GO:0046983
Rops2g01834 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 70 117 IPR002100 GO:0003677|GO:0046983
Rops2g01834 267 ProSiteProfiles MADS-box domain profile. 61 121 IPR002100 GO:0003677|GO:0046983
Rops2g01834 267 Pfam K-box region 153 227 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01834 Rops-Chr2 28595324 28602875 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01834 61 264 MADS-box Gene Family AT2G22540 44.304 3.46e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops2g01834 K-box 3.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01834 - - aprc:113860188 317.39