Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01828 ATGGCCTATCTTTGCTTCCTTCCTATAACCCATTTCTGGAAGGCAAGGATTGGTTTACTCTTGAATATGACTAGGAAGAGGATACAGATCAAGAAAATTGACAACATCAGCTCCAGGCAGGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTGTCAACTCTTTGTGAGGCTGACATAGCTCTCATAGTCTTTTCTTCAACTAGCAAGCTCTTTGAGTATGCTAGTTCAAGTGTGCAACAAGTAATTGAAAGGCGTAGTCGACATTCAGCAATTCATAGGTTGGACCACCCATCTATTGAGCTGCAGGTTGAGAATGACTCCAACGACACGCTGCGCAAGAAAGTAGAAGATAAGACTCGTGAACTGAGGCAGTTGAATGGGGAAGAACTGCAAGGATTGACATTACAAGACCTCCAGAAGCTAGAGGAACTCCTTAAAAGAAGTTTGACTAGTGTTTCAAAAGTAAAGGATGAAAAATTTATCCAAGACATCAACACCCTTAAGAGAAAGGGAGTGGAACTGATTGAAGAAAACCAAAGACTGAAACAGGTACCAAGCCTTATACATGGACGAAGGCAATCATTGGAATCCATTATTAGCAGCTCATCTTATCTTACTGAAGACCATGGCAGTGACACATGTCTTCAGTTGGGGAGACCTGTAGAAGCACTAGTAAGGAAGCTTGACCAAATGGAGGATAGTCTAATAGTTAGAGTTGATACTATTGTTGTTGCTCCTCCTACTGTTGTCCCTGCTCCTCTTACTACTGTTGCCGCTGCTCCTCCTTCTCCTACTACTGCTGCTCGTCCTTCTACTCCATCCTTAGGAGAACTATTACAAGGTTTTAGGCCTATTTTTGGTGTGAAGCCACCTCCAATTAGGCCTCCTTCTGTAAGTAATGTTTTCACAACAACAGCTCCTATTGGAACATTTCCTATGCCACTAATGGTTACTTCAGATACCACCAACACCATGAGGACAACAAGCTCAGAGGAAAAAGACTTTGAGCTTCGACGATGTGTGTTGGTGATTTGTTGGGTTTTTCGTCTTTTTTCTTTGAAATGGTACGAGTCTGCCGTAGAAGATGATGTCGTCGGCAAGGCACATATCGGAGCTACTGCCACTGCTGAAGCCGTTGAAGAACTCGCCGGAATCTGGTCAAAGAATTTTCTTAAATGA 1197 0.4311 MAYLCFLPITHFWKARIGLLLNMTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCEADIALIVFSSTSKLFEYASSSVQQVIERRSRHSAIHRLDHPSIELQVENDSNDTLRKKVEDKTRELRQLNGEELQGLTLQDLQKLEELLKRSLTSVSKVKDEKFIQDINTLKRKGVELIEENQRLKQVPSLIHGRRQSLESIISSSSYLTEDHGSDTCLQLGRPVEALVRKLDQMEDSLIVRVDTIVVAPPTVVPAPLTTVAAAPPSPTTAARPSTPSLGELLQGFRPIFGVKPPPIRPPSVSNVFTTTAPIGTFPMPLMVTSDTTNTMRTTSSEEKDFELRRCVLVICWVFRLFSLKWYESAVEDDVVGKAHIGATATAEAVEELAGIWSKNFLK* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01828 398 FunFam Transcription factor, MADS-box 35 104 - -
Rops2g01828 398 Pfam K-box region 115 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01828 398 Coils Coil 170 190 - -
Rops2g01828 398 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Rops2g01828 398 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Rops2g01828 398 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Rops2g01828 398 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Rops2g01828 398 Gene3D - 35 104 IPR036879 GO:0003677|GO:0046983
Rops2g01828 398 ProSiteProfiles K-box domain profile. 107 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops2g01828 398 Coils Coil 144 164 - -
Rops2g01828 398 Coils Coil 107 134 - -
Rops2g01828 398 ProSitePatterns MADS-box domain signature. 25 79 IPR002100 GO:0003677|GO:0046983
Rops2g01828 398 SUPERFAMILY SRF-like 24 103 IPR036879 GO:0003677|GO:0046983
Rops2g01828 398 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 185 - -
Rops2g01828 398 CDD MADS_MEF2_like 25 99 IPR033896 GO:0000977|GO:0045944
Rops2g01828 398 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Rops2g01828 398 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01828 Rops-Chr2 28367057 28382207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01828 23 189 MADS-box Gene Family AT2G22540 54.438 5.07e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops2g01828 K-box 9.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01828 - - aprc:113860188 308.916