Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01825 ATGCTGAAGGTAGTATTGAAGAGCACAAATATGAGGAGTCAGCAGCAGAGGCTGGTGGGAAAGATCAATTGCATGAAGCAGAAAAAAAGTGACAATGCCACTGAGTTTGTGGAAGATGAGCAAAAACCATCTCTCGTTGATGAAGATGAGAAAGAGAGGCATGATGAACTTCTTGCCCTTCCTCCACATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGAGATGCATGTGAAGATGATTTAAGGGAATTGTGCGAGCCAATGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGAGAAAGCAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAAGAGGTAGCGCAAAGGGCCATTGAGGAGATACATAACAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCACTGTCCGAAACCAAACACAGATTGTTCATCGGTAACGTTCCAAAAACTTTGACAGAGGATGAGTTTAGGAAAGTCATTGAGGGTGTTGGTCCCGGAGTTGAAAACATTGAGCTCATAAAGGACCCTCAAAATCCAAGCAGAAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCTTGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCGAGTTTTAAGCTAGATGGAAATACACCAACTATCACATGGGCAGATCCAAAGAACTCACTGGCCATATCTTGCTTCCTGGATTGA 717 0.4184 MLKVVLKSTNMRSQQQRLVGKINCMKQKKSDNATEFVEDEQKPSLVDEDEKERHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGESKGYAFVAFKTKEVAQRAIEEIHNKEFKGKTLRCSLSETKHRLFIGNVPKTLTEDEFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTITWADPKNSLAISCFLD* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01825 238 CDD RRM_SF 67 139 - -
Rops2g01825 238 MobiDBLite consensus disorder prediction 29 50 - -
Rops2g01825 238 SUPERFAMILY RNA-binding domain, RBD 146 230 IPR035979 GO:0003676
Rops2g01825 238 Gene3D - 146 226 IPR012677 -
Rops2g01825 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Rops2g01825 238 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 146 226 - -
Rops2g01825 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 227 IPR000504 GO:0003723
Rops2g01825 238 Gene3D - 7 145 IPR012677 -
Rops2g01825 238 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 28 227 - -
Rops2g01825 238 MobiDBLite consensus disorder prediction 31 50 - -
Rops2g01825 238 SMART rrm2_1 66 139 IPR003954 GO:0003676
Rops2g01825 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 213 IPR000504 GO:0003723
Rops2g01825 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Rops2g01825 238 SMART rrm1_1 146 223 IPR000504 GO:0003723
Rops2g01825 238 SMART rrm1_1 66 139 IPR000504 GO:0003723
Rops2g01825 238 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 5 145 - -
Rops2g01825 238 SUPERFAMILY RNA-binding domain, RBD 60 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01825 Rops-Chr2 28285863 28286579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01825 65 209 Eukaryotic Initiation Factors Gene Family AT1G49760 23.529 5.66e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01825 K13161 - gmx:100800974 387.497