Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01809 ATGGCATATCCAGAACCAATGCGACGAGCACGCTATGAGTATTCCTTGTCTAGACAACTTGATTCACAACAACGATCCACCCCGATGGCTGAAGATATTTTCAAATTCTCCATCAGAGTTTCATGTCAGTCAACTGATACAAACTCCAATTCACTTTTATTATACCGTCCCATTGAATACATAAGCTGCCAAAGATTCTTCCAAGAGGGTCAATCTTTCCTGCGTTCAGTTTTATCCCACCCACTCTTTCCTGCTGAATCTCTTAACCAAATAATAGATGGGGTCATATCCCAAGTTCGACGAATGTTCCATTTTGATCAAAGTGCTGCTAATGCTTTCGACCCTTTAGAATCTCAACCCCAAGAGTTCTCTTTGAATTTGGTGGTTGTCCTCTATAACATTGATGACATGCGTCTGGCGATGGAAAATTCAGTACAAGATATCGGAATGATTCCAGCGTCCAAGAAAGCCATCCAAACATCAGTGAAGAAGTCAAAGGTCGTGAATCAAAATGAGCATTGTACTATCTGCATGGAAGAGTTCCATGTCAACGATGATGGCATGACAGAAGGCTACACAATGCCCTGCAATCACATGTTTCATCAACAATGTATTGTGTCTTGGCTACAAACTAGTCACATGTGCCCATTGTGTCGCTACCCTTTGTCGACTGTCAACGAATAA 684 0.4181 MAYPEPMRRARYEYSLSRQLDSQQRSTPMAEDIFKFSIRVSCQSTDTNSNSLLLYRPIEYISCQRFFQEGQSFLRSVLSHPLFPAESLNQIIDGVISQVRRMFHFDQSAANAFDPLESQPQEFSLNLVVVLYNIDDMRLAMENSVQDIGMIPASKKAIQTSVKKSKVVNQNEHCTICMEEFHVNDDGMTEGYTMPCNHMFHQQCIVSWLQTSHMCPLCRYPLSTVNE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01809 227 CDD RING-H2_PA-TM-RING 173 219 - -
Rops2g01809 227 Pfam Ring finger domain 173 219 IPR001841 -
Rops2g01809 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 61 222 - -
Rops2g01809 227 SMART ring_2 174 218 IPR001841 -
Rops2g01809 227 SUPERFAMILY RING/U-box 162 224 - -
Rops2g01809 227 ProSiteProfiles Zinc finger RING-type profile. 174 219 IPR001841 -
Rops2g01809 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 224 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01809 Rops-Chr2 27977191 27977874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01809 137 222 C3H Transcription Factor Family AT1G18760 38.636 2.38e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01809 - - ccaj:109804929 180.644