Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01808 ATGCCCGGAGACATTTTCAAATCCTACATCTATGCTTTATCATTCTCAAACAATGCATTAACCCTAAGATCCTTACCATGCCATTCCATTGAATATATACACGTGCAAAGCTTCTTCCAACAGTGTCGAGATTTCTTAAGAACATTCTTATCCCAACCACGCTATTCTAATCCCACCCTACCTCTCCAAGGACTAGTAGATGGGGTGTTATCTGCCTACCGAGAAATGTTCCAATTTGATGATACTGTTTCCAGTACTCCAGAATCACAACACCGGGAGTTCCGTCTGTGTGTGGTCTTCCTCCTCCGCGACCGTGAGATGGAAAATTTGCAAGAGTCCATGCAAAATTTAAGAAGGCTTCCGGCATCTGAGGAAGCCATCCAAACGTTGCTAAGGAGATCCAATGTTATGGATACTAATGAGTGTTGTGCAATTTGCATGGAGGAGTTCCCGGTAGGAGGTGATAATGATGGAGCAGATGGCTTGGCGTTGCCCTGTGATCACGTGTTTCACAGCCAATGTATTTTATCTTGGTTGCGAAGAAGTCATACATGCCCCTTGTGTCGTTATGCTTTGCCTACTGAATAG 588 0.4422 MPGDIFKSYIYALSFSNNALTLRSLPCHSIEYIHVQSFFQQCRDFLRTFLSQPRYSNPTLPLQGLVDGVLSAYREMFQFDDTVSSTPESQHREFRLCVVFLLRDREMENLQESMQNLRRLPASEEAIQTLLRRSNVMDTNECCAICMEEFPVGGDNDGADGLALPCDHVFHSQCILSWLRRSHTCPLCRYALPTE* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01808 195 Pfam Ring finger domain 143 189 IPR001841 -
Rops2g01808 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 194 IPR013083 -
Rops2g01808 195 SMART ringv_2 142 189 IPR011016 GO:0008270
Rops2g01808 195 CDD RING-H2_PA-TM-RING 142 189 - -
Rops2g01808 195 ProSiteProfiles Zinc finger RING-type profile. 143 189 IPR001841 -
Rops2g01808 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 84 193 - -
Rops2g01808 195 SUPERFAMILY RING/U-box 131 193 - -
Rops2g01808 195 SMART ring_2 143 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01808 Rops-Chr2 27952983 27953570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01808 112 195 C3H Transcription Factor Family AT1G18760 38.372 2.24e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01808 - - ccaj:109804929 135.576