Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01807 ATGAAGTCAGTAAGCTGGATGAGAGACTTGGACATACTGAGGATCATCTTAAACACAAGGTACACCAAACTGAATCTAGAAATCAAGAAACTGACAGATGAAAAGAAAGATGCATTGGCCGCACAATATATTATAGCACTTCAAGAAGATAACAAAGCATTGGAACGACTCACAAAGTCAAAAGAGTCAGCATTGCTTGAAGCAGAAAGCATTTTAACAAGTGCACTAGAGAGGGCTTTAATAGTGGAGGAAGAGGAGAACAAAATATTAGAGAAAACTCACCGACAAAAGATTGTGGAAGTTGAAAAACTTAGCCAAACCATCCATGAACTTGAGGAGCTCATCTTATCTAGTGGAGCTAATGCTAATGCCATTCGTGATTATCAGCGACAGATTTCTGAATTGCAAGCAGAGATGCAACGACTGAAAGAAAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAATCACAGTTGAAGGATAAACTGAAGCTGAGGCTAAAAACACTGGAAGAAGGCTCAAAGCATTTCTCAAGCTACCCAATCAATTCAATGGCATTTTTCGGATCTTCAAAAGCAGAAAAGTTTAACATCCTAACAACCAATGGTGGACTGAGAAACAGATCCACATCACAACCAAGGGCATCTACTGTCGGAAGCTCTTTGTTCGAAAAGCCAAATATAAAAGGCAACCTAGACAGTGTTGCTGGGAACCTAAAGCCCAGCTTAGAATTCTCAACTACAACTTGCACCTCAAATTTTGAGTTTTCATCTAACCAGTTTTCAAGCAAAGTCTCAGAGCAAAACCAGATGGATGGTAGAGAGCTTGGTAGCAGAAGAGATGGATCAGTTAAAGCTGCTGTTAACTTCTATGATGATAGGATTGCTGATACTGAAATTCCTTCATTGAAGAAAACTCAGATGGATTTCTCAGTGAAGCCCCCTTCAAGAACAAGAGAACTACACAGAGCAAGAAGGGATATTGACCGGTACAAAGAGAGCAGATGGACTGTAGAATCTGCAAAAGCTCAAGCAGAATCGGAGCTTTCTACTGCAAAGAAGACAGTGAAACATCTTTCTTCTATGATTGAGGAATCAAGTTACAAGGGTAAGGCACAAATGAAAGATATAGACAAACTAGAGAAGTGGGGAAAGAAACAACATGGGGGAATGGTTGCAAGGAGGAATGAGAATTATGAGTATGCAAAAGTGATGAGAGAATTGGAAGATCTTAAAAAGGAGCTATTCAAGTTAAAGCTTGATGTGGCTTCTGTGTTGGAAGAGAAATCCCGGGCAGAGAAAGAAATTGAAGCATCAAGCTCAAAGATTATCTCTTGTTCAAGAACTGTAGAAGGACTTAGCAAGGAGATTGAGGAAGCCAATGAAGAACAAGTACTTGCTGAACTGGCCAGGATTGAGGCTTTGAAAGAATTGGGGGACATTGAAGCCCAGAGAGAAAAGGAAGCAAATGAATTTTCATTCAAATTGGAAAGCAATAAGAAAAAGTGGAAGGAGATAGATGAACCAAAGGAGCTTGAAATGAAATTATCTGCAACAATGTCAGATATCGATCTCTTGCAGAATGAGTTGAACTCAGTTAAAGAAATGGAGAAAAGGGTTCAAGGAGATGAGATTATGAAGCAATTGGAAGGAAGTTTCACGAAAAGAGAGGAATCAGGTGACTCTACCATGTTAAAGACTATAACAGAAGAATTGGAGGCAGCAAAGAAAGAATTAGCTTTGGTTAGAGAAGAAGGATTTCAGTTTATGGCATCTATGGATGTTATAAGAAATGAACTGAAGCATGTTACTGATGAGACAGTTCGCTTGAAGAAGGAAGGGAAAACGGATTCAACAGTTCAAAATCTCAATTCCAAGATTCTGAGAGCAAAATCCAAGTTAGAAGCTGTATCAGCTGCAGAGGAAAAGGCCAGATCCAAGTTAGAAGCAGCAGCTAATGCATGGATTGAAGCTCTCAAGGCCAAATCCCAACCCCAGGAGTTCCAATTGGATTTGGAGATCATTCTCTATGATGGTAATGACATGCGTGTGGTGATGGAATACTCCATGCAAGATTTTAGAATGATTCTGGCATCCAAGAAAGCCATCCAAACGTCACTGAAGAAATCGAATGTTATGAATCAAAATGAGTATTGTACTATCAGCATGAAAGAGTTCGATGTCAATAATGATGGGAAAATAGAGGGCTACACAATGCCCTGCAATCACATGTTTCACCAACGATGTATTGTGTCCTGGCTACAAACCAGTCATCTATGTCCATTGTGTCGCCATGCTTTGTCAACCGTCAACGACTAA 2319 0.3989 MKSVSWMRDLDILRIILNTRYTKLNLEIKKLTDEKKDALAAQYIIALQEDNKALERLTKSKESALLEAESILTSALERALIVEEEENKILEKTHRQKIVEVEKLSQTIHELEELILSSGANANAIRDYQRQISELQAEMQRLKEKLAISERTAKAESQLKDKLKLRLKTLEEGSKHFSSYPINSMAFFGSSKAEKFNILTTNGGLRNRSTSQPRASTVGSSLFEKPNIKGNLDSVAGNLKPSLEFSTTTCTSNFEFSSNQFSSKVSEQNQMDGRELGSRRDGSVKAAVNFYDDRIADTEIPSLKKTQMDFSVKPPSRTRELHRARRDIDRYKESRWTVESAKAQAESELSTAKKTVKHLSSMIEESSYKGKAQMKDIDKLEKWGKKQHGGMVARRNENYEYAKVMRELEDLKKELFKLKLDVASVLEEKSRAEKEIEASSSKIISCSRTVEGLSKEIEEANEEQVLAELARIEALKELGDIEAQREKEANEFSFKLESNKKKWKEIDEPKELEMKLSATMSDIDLLQNELNSVKEMEKRVQGDEIMKQLEGSFTKREESGDSTMLKTITEELEAAKKELALVREEGFQFMASMDVIRNELKHVTDETVRLKKEGKTDSTVQNLNSKILRAKSKLEAVSAAEEKARSKLEAAANAWIEALKAKSQPQEFQLDLEIILYDGNDMRVVMEYSMQDFRMILASKKAIQTSLKKSNVMNQNEYCTISMKEFDVNNDGKIEGYTMPCNHMFHQRCIVSWLQTSHLCPLCRHALSTVND* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01807 772 Coils Coil 620 640 - -
Rops2g01807 772 Coils Coil 523 543 - -
Rops2g01807 772 Pfam Weak chloroplast movement under blue light 319 658 IPR008545 -
Rops2g01807 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 769 IPR013083 -
Rops2g01807 772 Coils Coil 394 470 - -
Rops2g01807 772 Coils Coil 21 41 - -
Rops2g01807 772 Coils Coil 342 362 - -
Rops2g01807 772 Coils Coil 565 585 - -
Rops2g01807 772 Coils Coil 593 613 - -
Rops2g01807 772 MobiDBLite consensus disorder prediction 202 222 - -
Rops2g01807 772 SUPERFAMILY RING/U-box 711 769 - -
Rops2g01807 772 ProSiteProfiles Zinc finger RING-type profile. 719 764 IPR001841 -
Rops2g01807 772 Pfam RING-H2 zinc finger domain 734 764 IPR024766 GO:0008270
Rops2g01807 772 Coils Coil 47 67 - -
Rops2g01807 772 Coils Coil 125 159 - -
Rops2g01807 772 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 282 662 - -
Rops2g01807 772 Coils Coil 94 114 - -
Rops2g01807 772 SMART ring_2 719 763 IPR001841 -
Rops2g01807 772 Pfam Microtubule-associated protein 70 135 240 IPR009768 GO:0007010|GO:0008017
Rops2g01807 772 Pfam Microtubule-associated protein 70 45 136 IPR009768 GO:0007010|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01807 Rops-Chr2 27925892 27938871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01807 698 764 C3H Transcription Factor Family AT3G15740 38.806 1.41e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01807 - - gmx:100809271 478.404