Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01800 ATGGAGTTTCATCACAGAAGGTTATTACCTGAGTCATCTGACTGTGAACGCTTCTGTCTTGAGGGAAATTATTGTTCATCAGATTGTGATGATTGCCTCAAGAAGTGCTACTCCTCCTCTCTATTACCACCACCATCACCTCCTGTTGAGGATCACAGCAAAAACCACAAAGTCTCCACCTACTTGATCATAAGTTTTTCCATAGTAGGCACTGCTTTCTTTCTTTTATGCTGCTATGCCATCTATGTCAAGTTTTTCTCTGGTAGGAACAGGTCAAGGAGGAGGGCTTTATCACAACAACAAACACAAGAAGATTTTGTTGATGAAGAACATGGTCCTGTGGTGGACCACCCCATATGGTACATCCGAACCACTGGTCTCCAACAATCAATTATCAGTGCTATAACAATTTGTAAGTACAAGAGAGGTGAGGGCCTTATTGATGGAACAGAGTGTTCTGTTTGTTTGAGTGAGTTTCAAGAAGATGAGAATCTTAGACTTTTGCCAAAGTGTAACCATGCTTTCCATTTACCTTGTATTGATACTTGGCTTAGATCACATACTAATTGTCCAATGTGCCGGGCTCCTATTGTTACCAACCCGGCTAGGATTCCATCTTTGGAGCCTAATGTTTTGGGTTCAAGTTCTGTGGAAAGTGCCCACATGGGAGTTTTGGAAAATAGTGGTGAGATCAGTGGTAGAATGGAAGATGGTGCAGCTCAGTTGAGGAATGGAGAAGGGGAGGAAGGACAAGAAGCTGAAGATGGGAGAAGGGTATGTGAAACTGAGAGTTCAGCTTCAGAAGTGGTTAATATACAGCCAAGAAGATCAGTGTCTCTAGATTCTTCTTCTGTTGCTAAGATCAATCTTGCTCTTGCCAATGTTCTATCTGTGGAATCTCATGGGAATTCAAACAGGCATGAAGTCAATGAACAAATGGTTTCAAAGAGAGTTGATGGAAATGGGAACTTGGTAACTGCTGCAAAAGGTAGTTCTTCTTCAAGGACAAGGGATCTGCAAAGTGAGCCTAGCTCAATGAAGAGGTCAAGATCCTTCAATAGTAAACACCTACTATCATGGTATAGCCGCAGCCAGAAGAAGCCAAATGCTCCTTTGAGAAGCTTTTGA 1128 0.422 MEFHHRRLLPESSDCERFCLEGNYCSSDCDDCLKKCYSSSLLPPPSPPVEDHSKNHKVSTYLIISFSIVGTAFFLLCCYAIYVKFFSGRNRSRRRALSQQQTQEDFVDEEHGPVVDHPIWYIRTTGLQQSIISAITICKYKRGEGLIDGTECSVCLSEFQEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPARIPSLEPNVLGSSSVESAHMGVLENSGEISGRMEDGAAQLRNGEGEEGQEAEDGRRVCETESSASEVVNIQPRRSVSLDSSSVAKINLALANVLSVESHGNSNRHEVNEQMVSKRVDGNGNLVTAAKGSSSSRTRDLQSEPSSMKRSRSFNSKHLLSWYSRSQKKPNAPLRSF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01800 375 Pfam Ring finger domain 151 194 IPR001841 -
Rops2g01800 375 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Rops2g01800 375 SMART ring_2 152 193 IPR001841 -
Rops2g01800 375 MobiDBLite consensus disorder prediction 315 352 - -
Rops2g01800 375 CDD RING-H2_EL5-like 151 194 - -
Rops2g01800 375 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 53 216 IPR044675 -
Rops2g01800 375 MobiDBLite consensus disorder prediction 325 352 - -
Rops2g01800 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 201 IPR013083 -
Rops2g01800 375 FunFam RING-H2 finger protein ATL54 127 200 - -
Rops2g01800 375 SUPERFAMILY RING/U-box 146 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01800 Rops-Chr2 27779935 27781660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01800 48 236 C3H Transcription Factor Family AT1G72220 47.291 6.08e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01800 - - mtr:11411830 428.328