Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01788 ATGGAAAACGACGACGTTGATATGCTTGGAGCTGACAACAACGAAGTTGAATTGGATGACATGAAGCAGCGATTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAAGAGATGGGATCTGTGCAAGATCCTGCAAATGATGCTGCTGCAAGCCAGATCAATAGAGAGGAAGTAGATTCTCGATCAGTCTTTGTAGGCAATGTGGATTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACAGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAGCCCAAGGGTTATGCTTATGTAGAATTTCTTGAAGTGGAGGCTGTTCAAGAGGCTCTATTGCTGAATGAATCTGAACTACATGGGCGTCAATTGAAGGTCACTGCTAAGAGGACCAACGTACCAGGGATGAAGCAATATCGTCCCCGCCGGCCCAATCCTCACATGGGGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCCTATGCTCCTTATGGATTTGGAAAGGTTCCAAGGTTCAGAATGGGCATGCGCTACAGCCCCTACTATTGA 594 0.4731 MENDDVDMLGADNNEVELDDMKQRLKEMEDEAAALREMQAKVEKEMGSVQDPANDAAASQINREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQYRPRRPNPHMGFRGRTPYAPPFAYAPYGFGKVPRFRMGMRYSPYY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01788 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 157 - -
Rops2g01788 197 SUPERFAMILY RNA-binding domain, RBD 59 167 IPR035979 GO:0003676
Rops2g01788 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 145 IPR000504 GO:0003723
Rops2g01788 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 139 IPR000504 GO:0003723
Rops2g01788 197 SMART rrm1_1 70 141 IPR000504 GO:0003723
Rops2g01788 197 CDD RRM_II_PABPs 70 141 - -
Rops2g01788 197 Gene3D - 7 142 IPR012677 -
Rops2g01788 197 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01788 Rops-Chr2 27553722 27560160 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01788 70 140 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 9.48e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01788 K14396 - mnt:21400190 329.717