Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01784 ATGGTGGATTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACAGTAAACCAAGTCATCATTCGCACTGATAAGTTTGGCCAGCCCAAGGGTTATGCTTATGTAGAATTTCTTGGAGTGGAGGCTGTTCAAGAGGCTCTATTGCTGAATGAATCTGAACTGCATGGGCGTCAATTGAAGGTCACTGCTAAGAGGACCAACATACCAGGGATGAAGCAATATCATCCCCGCCGGCCCAATCCTTACATGGGGTTTCGAGGATATGCACCTCCTTTTGCCTATGTACGTTTGTACTATGTTTTTTCCTTACCAATGTTGTCACTTTTTGCTGTAATAGTAGACTTATAG 363 0.4353 MVDYSCTPEEVQQHFQSCGTVNQVIIRTDKFGQPKGYAYVEFLGVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYHPRRPNPYMGFRGYAPPFAYVRLYYVFSLPMLSLFAVIVDL* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01784 120 SMART rrm1_1 2 67 IPR000504 GO:0003723
Rops2g01784 120 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 2 95 - -
Rops2g01784 120 Gene3D - 1 75 IPR012677 -
Rops2g01784 120 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 65 IPR000504 GO:0003723
Rops2g01784 120 CDD RRM_II_PABPs 2 67 - -
Rops2g01784 120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 71 IPR000504 GO:0003723
Rops2g01784 120 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01784 Rops-Chr2 27505779 27506723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01784 2 109 Eukaryotic Initiation Factors Gene Family AT2G36660 27.434 3.95e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01784 K14396 - mnt:21400190 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01784 2 27505779 27506723 Rops11g00285 11 3866503 3870943 PCT