Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01779 ATGATAAATAATCTCAGTCAAGTATCGTACCAGGTTATAACTGCAGTTCAAGAACGGTTCCAATTAGACCAGAATTATGCCAATGCTTCAGAATCACAACCTAGGGAGTTTTCTCTATGTTTGGTCATCATGATCTATGAGCGTGTGACTAACATGGAAGGGTCCGTGCAAAATTTCAGAATGGTTCCAGCATCTGAGGAAGCAATTAACACATTGTTAAGGAAATCCAAGGTTACAAAATTGAACGAATCTTGTGCTATTTGCTTAGAGGACTTCAATGTTGATGGTGATAATGATGCAGTGGAACTACCCTGTGATCACGTGTTTCACCAACAATGTATTGTACCATGGTTGCGAACCAATCACATGTGTCCCTTGTGTCGCTACACTTTACCAACCGTACGGGACTAA 411 0.4063 MINNLSQVSYQVITAVQERFQLDQNYANASESQPREFSLCLVIMIYERVTNMEGSVQNFRMVPASEEAINTLLRKSKVTKLNESCAICLEDFNVDGDNDAVELPCDHVFHQQCIVPWLRTNHMCPLCRYTLPTVRD* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01779 136 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 33 132 - -
Rops2g01779 136 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
Rops2g01779 136 SUPERFAMILY RING/U-box 84 134 - -
Rops2g01779 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 134 IPR013083 -
Rops2g01779 136 CDD RING-H2_PA-TM-RING 84 128 - -
Rops2g01779 136 SMART ring_2 85 127 IPR001841 -
Rops2g01779 136 Pfam Ring finger domain 84 128 IPR001841 -
Rops2g01779 136 SMART ringv_2 84 128 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01779 Rops-Chr2 27410234 27410644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01779 56 132 C3H Transcription Factor Family AT1G18760 45.570 6.30e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01779 - - ccaj:109804929 120.168