Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01778 ATGGCGAATGTTACAGAAGTGCAAGGTTGCTGCTATGAAGTTATAAGACTTGACCATCTGCAGCAACAGCGTCCAACGCTTATGTCCGGAGATTATTTCAAATTCTACGTTGGTGTTCTGTCATATTCATATGATACAAACTTTAATAGAAACTTTACATCCTCACAATATGGTCCCTTTGAATATATACAATGCCAAAGCTTCTTTCAAGATTGTGGAGATTTTCTACGAATATTCTTCTCCCACCCACGCTTTTCCATGCTAAATAATCTCCATCGAGTAATAGATGAGGTTATATCTAAGGTTCGAGAACAGTTCAAGTTTGATCATAATGTTGCTAATGCCTTAGAATCACAACCTCGAGAGTTCCCTCTGGGTTTGATCATCATGATGGAAGAGTTCGAGCATAATTTCAGAATGGTTCCAGCATATGAGGAAGCAATCAACATGTTAATTAGGAAATCCAAGGTTACAAAACTGAATGAACCTTGTGCTATTTGCTTAGAGGAATTCAATATCGATAGTGATGGTGATGATAACAATAATGTGGTGGAATTACCCTGTGATCATGTGTTTCACCAGCAATGTATCGTACCATGGCTGCAAACCAGTCACTTGTGCCCCTTGTGTCGATATGTTTTGCCAACCGAACAGGGCTAA 660 0.3909 MANVTEVQGCCYEVIRLDHLQQQRPTLMSGDYFKFYVGVLSYSYDTNFNRNFTSSQYGPFEYIQCQSFFQDCGDFLRIFFSHPRFSMLNNLHRVIDEVISKVREQFKFDHNVANALESQPREFPLGLIIMMEEFEHNFRMVPAYEEAINMLIRKSKVTKLNEPCAICLEEFNIDSDGDDNNNVVELPCDHVFHQQCIVPWLQTSHLCPLCRYVLPTEQG* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01778 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 215 - -
Rops2g01778 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 219 IPR013083 -
Rops2g01778 219 CDD RING-H2_PA-TM-RING 163 211 - -
Rops2g01778 219 SMART ringv_2 163 211 IPR011016 GO:0008270
Rops2g01778 219 ProSiteProfiles Zinc finger RING-type profile. 164 211 IPR001841 -
Rops2g01778 219 Pfam Ring finger domain 164 211 IPR001841 -
Rops2g01778 219 SMART ring_2 164 210 IPR001841 -
Rops2g01778 219 SUPERFAMILY RING/U-box 163 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01778 Rops-Chr2 27402067 27402726 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01778 133 217 C3H Transcription Factor Family AT1G18760 43.678 3.30e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01778 - - ccaj:109804929 129.798