Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01776 ATGGCGAATGTTACAGGACTACGAGGTTTTTGCTTTAGAGTTAGAAGACTTGATCAGCTAGAGCAACAACGTCCAAAGCTTATGCCTGGAGATTATTTCAAATTCAACGTTACTGTTTGGAATTACTCATATGATACAGACTTTAATAGAAACTTTACACGCTCACAATATGGTCCCTTTGAACACATACAATGCCAAAGCTTCTTCCAAAATTGTGAAGATTTTCTACTAACATTCTTATCCGATCCAAGTTTTTCCACTCTAAATAATCTCCATCAAATATCAGATCAGGTTATATCTAAGGTTCGAAATCTGTTCCAATTAGACCACAATGTTGCTAATGCTTCAGAATCACAACCCCCCCGGGAGTTCCCTTTGAATTTGATCATAGTCATCTACGAGCGTGTGAATAATATGGTAGAGTCTGTGCAAAATTTCGAAATGGTTCCAGCATCCAAGGAAGCAATCAGCACGTCGCTAAGGAAATCCAAGGTTACGAAATTGAATGTGTCTTGTGTTATTTGCTTGGACGAGTTCATTGTTCGTGGTGATGGTGATGGTGACGTGGTGGAATTACCCTGTGATCACGTGTTTCACCAACAATGTATTGTACCATGGCTGCAAACTAGTCACGTGTGTCCCTTGTGTCGTTACACTTTGCCAACTATCTAG 672 0.3988 MANVTGLRGFCFRVRRLDQLEQQRPKLMPGDYFKFNVTVWNYSYDTDFNRNFTRSQYGPFEHIQCQSFFQNCEDFLLTFLSDPSFSTLNNLHQISDQVISKVRNLFQLDHNVANASESQPPREFPLNLIIVIYERVNNMVESVQNFEMVPASKEAISTSLRKSKVTKLNVSCVICLDEFIVRGDGDGDVVELPCDHVFHQQCIVPWLQTSHVCPLCRYTLPTI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01776 223 CDD RING-H2_PA-TM-RING 171 217 - -
Rops2g01776 223 SMART ringv_2 171 217 IPR011016 GO:0008270
Rops2g01776 223 Pfam Ring finger domain 171 217 IPR001841 -
Rops2g01776 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 221 - -
Rops2g01776 223 ProSiteProfiles Zinc finger RING-type profile. 172 217 IPR001841 -
Rops2g01776 223 SMART ring_2 172 216 IPR001841 -
Rops2g01776 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 222 IPR013083 -
Rops2g01776 223 SUPERFAMILY RING/U-box 171 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01776 Rops-Chr2 27369500 27370171 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01776 132 221 C3H Transcription Factor Family AT1G18760 40.217 8.34e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01776 - - ccaj:109804929 129.028