Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01768 ATGGCGGAGCGTGCTTCTTATGGATTGGGTCCTCGATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGTAACTACCGGATGTTTCAAATCACATCAGAACCGCCTAACAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGGTATTTTAGAAAGGATGGACACAATTGGAGAAAGAAAAAAGATGGAAAGACTGTAAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAACTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACTAATATTGCTGCTGCAAGTACAGATACTGATGAGGTTACATCAGATTCCCAGAAGGGCAGTTCTGTATCATCTGGCTTTCCCAGAAATTATAGTAGTGTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACTAGCACTTTGACATCTTTATGTGAAGATGCTGATTCAGGTTATTCTGATGATATTCACCAAGCAAGTTCTGGATTACACTCTTTCCGTGAGTCACAGAATATGGGGAATGGTCAGCCAATGAATAAGATTGATACTCATTCAAATAGTTCATATCTTATGCACCCCTTTTCAGGTGATCATGGACAGTTATCAATTTCTGGAACAGACTATATCCATCTTGTTCAGGGGGATAAATCTAGACCAAGTGATACTACGTACATTGAGGGTCAGAGAGCACATGGCATGGCCTCCTGGGACAATGTCATGGAGCAATCTGCAGGATTGCACACTGATCCTTCTCCTGTGTCGTCTACTTCCATTACATCAAGTTCAATTAGAAACATCCTTGAGCAAGAACATGCTGCCCTCACTGAAGAGGCAGGGTCCTCTCAGGCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGTGCCTAAATGGAGCTTTACCCAATCACTGAGTATAGAATTTGGATCTGATTATAGCACTGGTTTACTGGGAAATGAAACTAATAATGCAAGTTCAGAAATTGGTTCTGACCTGTTCGCTTTTAATTATGAGCCAAAAGAGCAGTCTGTGCAGCAAGACTTCTCAAAGCAGCATACACTTACACAATCTCAGCGTGCACTGAAATCTGAGCATGAAGTTCCCGGTGAAGAAAGTATCAACTATGCCTTGACTGTGAAGGGTGGATTATTGGATGGAAAGGAGAGCCTGAAGAAGGTTGATAGCTTCTCTAGGTGGGTTACTAAAGAGCTGGCAGCGGTGGATGATTTGCATATGCAGTCTTCCCCTGGCATTTCATGGAACACAGATGATTGTGGGCACGTGATAGATGATACCTCATTGAACCTTTCCCTTTCTCAAGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTACACTGAAACAGAAATTGAGGTATTGATTATTGGGACATTTATGAAGAGCCAACCAGAGGTAACAACATGTAATTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCTGCTGAGGTTTTAGGTAATGGAATTCTGTGCTGTCAAGTTCCACCTCATCAGATTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTAGGGAATTTGAGTACAAAGAGGGCTTTGATAGAAATCTAGATTTGGCAGATTTTTTTATCAGTTCAACTGAAATGCTGCTTCATTTGCGACTGGAGGGATTACTTTCCTTAAACTCAGCGCACCCTTCAAATCAAGCTTTTGAGGATGATATGGAGAAAAGAAACTTAATTTTTAAGCTTATTTCTCTGAAAGAGGAAGAGGAATATTCATGTAAGGAAGAGCCAACTGTAGAGATGGATATATCAAAACACAAGTTGAAGGCACATATATTTCACAGGCAGGTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCACATGTATTAGGCGAGGACGGGCAAGGTGTCTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAACACCAATTGTAACTGCTGGAGTTAATATCAACTTCCGGGATGTGAATGGATGGACGGCTCTACACTGGGCTGCATACTGTGGCAGGGAGCGAACAGTTGCTGTTCTTGTCTCCATGGGTGCAGCTGCTGGAGCATTAACAGATCCGTCTCCAGCATTTCCGTCAGGAAGGACACCTGCAGATCTTGCTTCTAGCAACGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGATGATCTGAATAGAGATGGTAGGAAAGATACTTCAGGGATGAAAGCAGTGCAGACAGTTTCGGAGCGAATTGCGACACCTGTGCTTTGTGGTGATATACCTGATGCTCTGTGCCTTAAGGATTCTCTTAATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAATCATTCCAGAGGAAGCAGTTGGCTCAGTATGAAGATGATGATGAGTTTGGTTTGTCAGATCAGCAAGCTCTTTCCGTTCTTGCTTCTAAGACATGCAAATCTGGACAAGGAGAGGGTTTGACCAATGCTGCTGCAACACAAATACAGAAAAAGTTTCGTGGCTGGACGAAGAGAAAAGAATTCTTGTTCATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGAAAGAAGTACAAATCAGTCATTTGGTCCGTGGGAATCCTGGAGAAGGTCATCTTACGCTGGAGGCGTAAGGGCAGTGGTTTACGTGGATTTCGGCAAGAGGCCGTTAATAAGATCCCCACCCAACCAAGCGAACCTGTGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAAGAAAGGTTCCAAAAGGCCCTGACAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGCTGCTAAATGTAGTAGAAGACTTCCGTCAAACCAAGCAGGCATGCAATTTGAGTTTGATAAATTCGGAAGAGGCAGTTGATGGTGTGGAGGATTTGATCGATATTGACATGCTTTTAGATGATGAAAATTTCTTACCTATAGCATTCGATTGA 3246 0.4264 MAERASYGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYRMFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIAAASTDTDEVTSDSQKGSSVSSGFPRNYSSVPSGSTDSMSPTSTLTSLCEDADSGYSDDIHQASSGLHSFRESQNMGNGQPMNKIDTHSNSSYLMHPFSGDHGQLSISGTDYIHLVQGDKSRPSDTTYIEGQRAHGMASWDNVMEQSAGLHTDPSPVSSTSITSSSIRNILEQEHAALTEEAGSSQALQSNWQIPFEDNTVPKWSFTQSLSIEFGSDYSTGLLGNETNNASSEIGSDLFAFNYEPKEQSVQQDFSKQHTLTQSQRALKSEHEVPGEESINYALTVKGGLLDGKESLKKVDSFSRWVTKELAAVDDLHMQSSPGISWNTDDCGHVIDDTSLNLSLSQDQLFSINDFSPKWAYTETEIEVLIIGTFMKSQPEVTTCNWSCMFGEVEVPAEVLGNGILCCQVPPHQIGRVPFYVTCSNRFACSEVREFEYKEGFDRNLDLADFFISSTEMLLHLRLEGLLSLNSAHPSNQAFEDDMEKRNLIFKLISLKEEEEYSCKEEPTVEMDISKHKLKAHIFHRQVKEKLYSWLLHKVTETGKGPHVLGEDGQGVLHLVAALGYDWAITPIVTAGVNINFRDVNGWTALHWAAYCGRERTVAVLVSMGAAAGALTDPSPAFPSGRTPADLASSNGHKGISGFLAESLLTSHLESLTVDDLNRDGRKDTSGMKAVQTVSERIATPVLCGDIPDALCLKDSLNAVRNATQAADRIHQVFRMQSFQRKQLAQYEDDDEFGLSDQQALSVLASKTCKSGQGEGLTNAAATQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKSVIWSVGILEKVILRWRRKGSGLRGFRQEAVNKIPTQPSEPVKEDDYDFLKEGRKQSEERFQKALTRVKSMVQYPEARAQYRRLLNVVEDFRQTKQACNLSLINSEEAVDGVEDLIDIDMLLDDENFLPIAFD* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01768 1081 Gene3D - 904 950 - -
Rops2g01768 1081 SMART ANK_2a 766 795 IPR002110 GO:0005515
Rops2g01768 1081 SMART ANK_2a 727 756 IPR002110 GO:0005515
Rops2g01768 1081 Pfam Ankyrin repeats (3 copies) 699 788 IPR002110 GO:0005515
Rops2g01768 1081 SMART iq_5 903 925 IPR000048 GO:0005515
Rops2g01768 1081 SMART iq_5 926 948 IPR000048 GO:0005515
Rops2g01768 1081 ProSiteProfiles IQ motif profile. 927 951 IPR000048 GO:0005515
Rops2g01768 1081 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1042 - -
Rops2g01768 1081 SUPERFAMILY E set domains 494 579 IPR014756 -
Rops2g01768 1081 SMART CG_1_2 18 136 IPR005559 GO:0003677
Rops2g01768 1081 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Rops2g01768 1081 ProSiteProfiles IQ motif profile. 904 933 IPR000048 GO:0005515
Rops2g01768 1081 FunFam Calmodulin-binding transcription activator 2 903 951 - -
Rops2g01768 1081 FunFam Calmodulin-binding transcription activator 2 487 583 - -
Rops2g01768 1081 ProSiteProfiles Ankyrin repeat region circular profile. 727 752 - -
Rops2g01768 1081 Pfam IPT/TIG domain 494 579 IPR002909 -
Rops2g01768 1081 MobiDBLite consensus disorder prediction 146 239 - -
Rops2g01768 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 953 IPR027417 -
Rops2g01768 1081 MobiDBLite consensus disorder prediction 146 193 - -
Rops2g01768 1081 Gene3D - 657 796 IPR036770 -
Rops2g01768 1081 Pfam IQ calmodulin-binding motif 906 924 IPR000048 GO:0005515
Rops2g01768 1081 Pfam IQ calmodulin-binding motif 929 948 IPR000048 GO:0005515
Rops2g01768 1081 Gene3D Immunoglobulins 487 582 IPR013783 -
Rops2g01768 1081 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
Rops2g01768 1081 SUPERFAMILY Ankyrin repeat 683 788 IPR036770 -
Rops2g01768 1081 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Rops2g01768 1081 MobiDBLite consensus disorder prediction 200 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01768 Rops-Chr2 27290102 27300872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01768 1 1062 CAMTA Transcription Factor Family AT5G64220 54.017 0.0 1074
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Rops2g01768 CG-1 3.6e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01768 K21596 - gmx:100795682 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01768 2 27290102 27300872 Rops11g00269 11 3632781 3638976 PCT