Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01738 ATGGGAAACATGGAGAGAATAATTTCATCTTTCATGGGTTTGTTTCTTCTTTGGGCAATTTTGTTGATCAAGGTTTCTGGCAATTTAGAAGGTGATGCCCTGAATGCATTAAAGAGCAACGTGTTTGATCCCAACAGGATTCTTCAAAGCTGGGATCCTACCCTTGTCAATCCTTGCTCATGGTTTCATGTTACTTGCAGCAGTAATAATAGTGTGACACGTGTTGATCTAGGAAATGCAAACCTTTCGGGTCAACTGGTTCCACAGCTTGGTCTGCTCCCAAATTTGGAACACTTGGAACTTTATAATAATAATATAACTGGGAAAATCCCAAACGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAAGTTAACTGGCCCCATTCCAAACACTTTGGGCAACCTTAAAAAACTACGTGTCCTGCGACTCAACAACAACAGCTTGTCAGGAATAATTCCTATGTCTTTGACCACTGTCACTTCACTGCAAGTCCTTGATTTGTCAAACAACAACTTAACAAGAGACGCCCTGGTTAATGATTCATTTTCATTTATTCCTGACAGTTTTAACAGTAATCATCACTTGAATAAAAAATCCAGTCCAACTCCTCTGCAACAAACTACTTCAGGTTACAGAGCTACTGGAGCCATTGTTGTGGGTGCTGCATTGTTGTTGGTAGCCCCTGCAATTGCACTTGCTTGTTGGCGAAGAAGGAAACTACGTGATCGTTTCATTGATGATGTTCCTGTGGCAGATGAGGAGGATCTTGAAGTTCACTTTGGTCAGCTTAAAAAATTCTCACTGCATGAGCTGCAAATTGCGACAGATAACTTCAAAAACATTATGGGTAGAGGTGGATTTGGCAAGGTATATAAAGGACGCTTAGCAGATGGTTCTCTTGTAGCTGTTAAAAGACTTAAAGAAAAATGCACACAAGGTGGGCAGCTACAATTCAAAACTGAAATAAAAATGATCGGCATGGCTGTGCATAGAAATTTGCTTCGGCTACGTGGCTTTTGCATGACACATTCTGAACGGTTGCTAGTTTGTCCTTTCATGGTTAATGGAAGTGTAGCATCATGTTTACGAGAGTGTTCGGAATCACAACCATCACTTGACTGGCCAACACGGAAGCGTATTGCCCAAGGAGCTGCTAGGGGGCTTGCTTATTTGCATGACCATTGTCACCCGAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTAGTAGATAAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGGTTCAGGATTACAAAGATACTCATGTCACCACTGCTGTAATTGGTACCATTGGGCATATAGCACCAGAGTACTACTCAACTGGAAAGTTTACAGAGATGGTTGATGTTTATGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAAACAGCTTTTGATCTAGCACGGCTTGCCAATAATGATGATGCCAGTTTGCTTCATTGGGTGAAAGGACTCCTGAAAGACAAGAAGTTGAAGACACTGGTGGATGCAAATTTACGGGGCAATTATATTGATGAGGTAGAGCAGCTAATCCAAGTGGCCTTGCTATGCACACAAGACACCCCTTTGGAAAGACCAAAGATGTCTGAGGTGGTCAGAATGCTAGAGGGTGATGGTTTGGCTGAAAAATGGGATGAATGGCAGAAAGAGGAGATGATCCGCCAAGATTTCAACCTCAACTTCACCAACCTGCTAAATGCTAATTGGACAGTAGACTCAACTTTACTACAAGATGAACTGTCTCTGTCAGGTCCTAGATGA 1821 0.4152 MGNMERIISSFMGLFLLWAILLIKVSGNLEGDALNALKSNVFDPNRILQSWDPTLVNPCSWFHVTCSSNNSVTRVDLGNANLSGQLVPQLGLLPNLEHLELYNNNITGKIPNELGNLTNLVSLDLYLNKLTGPIPNTLGNLKKLRVLRLNNNSLSGIIPMSLTTVTSLQVLDLSNNNLTRDALVNDSFSFIPDSFNSNHHLNKKSSPTPLQQTTSGYRATGAIVVGAALLLVAPAIALACWRRRKLRDRFIDDVPVADEEDLEVHFGQLKKFSLHELQIATDNFKNIMGRGGFGKVYKGRLADGSLVAVKRLKEKCTQGGQLQFKTEIKMIGMAVHRNLLRLRGFCMTHSERLLVCPFMVNGSVASCLRECSESQPSLDWPTRKRIAQGAARGLAYLHDHCHPKIIHRDVKAANILVDKEFEAVVGDFGLAKVQDYKDTHVTTAVIGTIGHIAPEYYSTGKFTEMVDVYGYGVMLLELITGQTAFDLARLANNDDASLLHWVKGLLKDKKLKTLVDANLRGNYIDEVEQLIQVALLCTQDTPLERPKMSEVVRMLEGDGLAEKWDEWQKEEMIRQDFNLNFTNLLNANWTVDSTLLQDELSLSGPR* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01738 606 Pfam Protein kinase domain 285 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01738 606 ProSiteProfiles Leucine-rich repeat profile. 95 118 IPR001611 GO:0005515
Rops2g01738 606 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Rops2g01738 606 ProSiteProfiles Protein kinase domain profile. 282 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01738 606 SUPERFAMILY Protein kinase-like (PK-like) 263 556 IPR011009 -
Rops2g01738 606 Pfam Leucine Rich Repeat 95 117 IPR001611 GO:0005515
Rops2g01738 606 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Rops2g01738 606 Gene3D Phosphorylase Kinase; domain 1 254 358 - -
Rops2g01738 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Rops2g01738 606 FunFam Somatic embryogenesis receptor kinase 1 26 214 - -
Rops2g01738 606 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 566 - -
Rops2g01738 606 SUPERFAMILY L domain-like 31 192 - -
Rops2g01738 606 FunFam Somatic embryogenesis receptor-like kinase 1 359 575 - -
Rops2g01738 606 FunFam Somatic embryogenesis receptor kinase 1 253 358 - -
Rops2g01738 606 SMART serkin_6 282 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01738 606 SMART LRR_typ_2 141 164 IPR003591 -
Rops2g01738 606 SMART LRR_typ_2 165 190 IPR003591 -
Rops2g01738 606 SMART LRR_typ_2 93 117 IPR003591 -
Rops2g01738 606 Gene3D Transferase(Phosphotransferase) domain 1 359 575 - -
Rops2g01738 606 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01738 Rops-Chr2 26701480 26713374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01738 4 606 Receptor kinase-like Gene Family AT4G33430 65.165 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Rops2g01738 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01738 K13416 - rvl:131308865 818.15