Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01735 ATGGAAAATGCTATAAGCAACAGCAAGATGAAGGATCCGAAGGTGAGGGCTTTGAACGAAAACGTTTCGCCGTTGCAGATCGAGTTGGATGATAAGAGAGGACGCTATCTCCAATCAACGACGATGAGTCCAAGATTTCAACCGTATGCCGAAGACATCGACGTCGGTTCGCCGCTCGCACGCTACTTCTTCGCCGGATCTCCAATTTCCGGCAAGGTCACTCCCGCCGGCGAAGCCTTCACTCCTCCAACGTTCGGTTCCAAAGCCTTCACTCCTCCAACGTTCGGTTCCAGCAAGTACAGGTCCTCAAAAGTGCAACATCACTGCGGCAACAGTTCAGGAAACAGTAGTAGCTTCGGTTCTCGCGGTAGATTGTCGCTCTCGCCACTTTCTTCAATTGAGAATTTGGAGATCGTGCCACTCATGTCGCCGCCGATGTACGGCACGCCGGTGAAGGTGGATGAGGAAGTTATTGTGATGGATGATATTCTGGTGAGGCCAATGTCGGGAGGAAAGAACGCAAGGTCTTCGTCATCTTCCTCTGGCCGTGGTTCGTCTTCGTCGTCGTCGAAAAGCGTGTTCAAGACGGAGATTTGCAGAGCGTGGGAGGAATCTGGAAATTGCCGCTACAACTCCAAATGCCAGTTTGCACACGGAAAAGAAGAGCTTCATCCAAGTCGTCTCTCCATGAAGAGTAAATCTGAGGCACAGACGGGCAAGTTATCTGTTAGAGCGGGACTAAGCATGTTAGGCCCAAAAGGCCGCATTGTTCATTCGCAGCTTGCAGCTGAACCCGAACCTGAACCTGAACATGTAGTCACAAAATCCCAACCAGCTTCACCTGAACCTCATCATACCCCTGCCAGTTCCAACACTACCAATGATTGGTCACCCCTGGATGATGGCATTGAGGTTGTCCTCCCAAATGGTTCAGATAAAGCTCCATCAAGGGAGGAAGTTGATGCATACATTTCCGTTATTCTCTCTGGCCCCACTGCTAAAAGGAGACTACCAGTATTTGCAGTGCTTTGCGAGGGGCAGTAA 1044 0.5057 MENAISNSKMKDPKVRALNENVSPLQIELDDKRGRYLQSTTMSPRFQPYAEDIDVGSPLARYFFAGSPISGKVTPAGEAFTPPTFGSKAFTPPTFGSSKYRSSKVQHHCGNSSGNSSSFGSRGRLSLSPLSSIENLEIVPLMSPPMYGTPVKVDEEVIVMDDILVRPMSGGKNARSSSSSSGRGSSSSSSKSVFKTEICRAWEESGNCRYNSKCQFAHGKEELHPSRLSMKSKSEAQTGKLSVRAGLSMLGPKGRIVHSQLAAEPEPEPEHVVTKSQPASPEPHHTPASSNTTNDWSPLDDGIEVVLPNGSDKAPSREEVDAYISVILSGPTAKRRLPVFAVLCEGQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01735 347 PANTHER CCCH ZINC FINGER/TIS11-RELATED 67 260 IPR045877 GO:0003729
Rops2g01735 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 220 IPR000571 GO:0046872
Rops2g01735 347 Gene3D - 185 226 - -
Rops2g01735 347 MobiDBLite consensus disorder prediction 260 303 - -
Rops2g01735 347 SMART c3hfinal6 193 220 IPR000571 GO:0046872
Rops2g01735 347 SUPERFAMILY CCCH zinc finger 193 224 IPR036855 GO:0046872
Rops2g01735 347 MobiDBLite consensus disorder prediction 97 122 - -
Rops2g01735 347 ProSiteProfiles Zinc finger C3H1-type profile. 194 221 IPR000571 GO:0046872
Rops2g01735 347 MobiDBLite consensus disorder prediction 171 190 - -
Rops2g01735 347 MobiDBLite consensus disorder prediction 168 190 - -
Rops2g01735 347 FunFam zinc finger CCCH domain-containing protein 15-like 187 226 - -
Rops2g01735 347 MobiDBLite consensus disorder prediction 279 298 - -
Rops2g01735 347 MobiDBLite consensus disorder prediction 225 245 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01735 190 225 C3H Transcription Factor Family AT1G68200 50.000 3.66e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g01735 zf-CCCH 3.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01735 K18753 - gmx:102665928 325.094