Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01732 ATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGTTTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTTCAAAGAAAGGCATCCCTTTTGCCTTGTCATCCAGATGTTATTCCTGATCTTGAACTCTACCCATATGACCCATGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAACCAATGGTACTACTATAGCAGAAGGACACAAAATAGGATCACTAGCAATGGTTATTGGATGCCAATGGGAATGGAAGAACCAGTGGTTACAAGCTCAAACAACAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATTTAGGAGAAGCCCCTGATGGTAACAAAACCAATTGGATAATGCATGAGTATCGTCTTTCAGATTCTGCTTCCTCTAGCAGATCATCCAAGAAAAAAGCTCAACAAAGAACAGATCATAGTAAATGGGTGATATGTCGAGTTTATGAGCGTGATGAAGAGCAGGACAGTGATGGAATACAGCTTTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGACCTTGAAGAAGGAAGCATCAAGTCATGTGTGATGCAAGCATTCGCATGCTTTGAAGCACCAACACGAGCACTATATTATATCCATATGTTGTCATTACAAAAGAGTGACTGA 654 0.4098 MGDNNVNLPPGFRFYPTDEELVVHFLQRKASLLPCHPDVIPDLELYPYDPWELHGRALAEGNQWYYYSRRTQNRITSNGYWMPMGMEEPVVTSSNNKRVGMKKYYVFHLGEAPDGNKTNWIMHEYRLSDSASSSRSSKKKAQQRTDHSKWVICRVYERDEEQDSDGIQLSCLDEVFLSLDDLEEGSIKSCVMQAFACFEAPTRALYYIHMLSLQKSD* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01732 217 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Rops2g01732 217 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Rops2g01732 217 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Rops2g01732 217 FunFam NAC domain-containing protein 104 17 161 - -
Rops2g01732 217 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Rops2g01732 217 PANTHER NAC TRANSCRIPTION FACTOR 56 8 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01732 Rops-Chr2 26559653 26561148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01732 1 187 NAC Transcription Factor Family AT1G61110 39.320 2.38e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g01732 NAM 2.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01732 - - gmx:100813096 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01732 2 26559653 26561148 Rops2g01732 2 26559653 26561148 ECH