Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01724 ATGAAGGAAAGGAGACTACAAGGTTACAAACACTACATGATAGTTGTAGTGAGTTGCATAGATAGTGAGCCAATGGGCTGCAAAGACACTGAAGTGGTGGTAGCAGAGAACCAACCGACTTCTCAAAAAGTGTCATCACCTTACAAATACACACCTCATATCCAAATCTCTATCTTGGGTTTTCCTTCTGCGCGTTTTCCCCGAACTACTCGAGCTCCTTTGCTGCAGTTTAAAATGTCAGATGCGGAAGAGTATCGTTGCTTTATCGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTACTGAGGCAAAGGTGGTTGTTGACAAATTCTCTGGACGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCAAGAACGTGGTCGTGATCGTGATCGTGGTCGGGACCGAGATTACAGAGGTGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGCAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAGGGGGGAAGGGGGGGAAGGTATGGTGGTAGAGAAAGTAAATATGGTGGAAGCGGTGCTGGTGGTCACTATGGTCCAGATAGAAATGCAGATCGCTCTTCTGGTGGGCGCAACAGGGATTCTGGTAATCATGGAGATTCTGGAAATGATCGATATTATCGTGATCGTGATCGTGATCGTGCTGGACCATATGAACGACGGGGATCAGGAGGCTTTCGTTGA 873 0.457 MKERRLQGYKHYMIVVVSCIDSEPMGCKDTEVVVAENQPTSQKVSSPYKYTPHIQISILGFPSARFPRTTRAPLLQFKMSDAEEYRCFIGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYQERGRDRDRGRDRDYRGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGRESKYGGSGAGGHYGPDRNADRSSGGRNRDSGNHGDSGNDRYYRDRDRDRAGPYERRGSGGFR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01724 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 157 IPR000504 GO:0003723
Rops2g01724 290 ProSiteProfiles Zinc finger CCHC-type profile. 202 217 IPR001878 GO:0003676|GO:0008270
Rops2g01724 290 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 79 287 - -
Rops2g01724 290 Pfam Zinc knuckle 201 217 IPR001878 GO:0003676|GO:0008270
Rops2g01724 290 CDD RRM2_NsCP33_like 86 161 - -
Rops2g01724 290 SUPERFAMILY RNA-binding domain, RBD 71 194 IPR035979 GO:0003676
Rops2g01724 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
Rops2g01724 290 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Rops2g01724 290 Gene3D - 73 197 IPR012677 -
Rops2g01724 290 SMART rrm1_1 86 159 IPR000504 GO:0003723
Rops2g01724 290 MobiDBLite consensus disorder prediction 166 194 - -
Rops2g01724 290 FunFam Glycine-rich RNA-binding protein RZ1A 79 197 - -
Rops2g01724 290 Gene3D - 198 257 - -
Rops2g01724 290 SUPERFAMILY Retrovirus zinc finger-like domains 186 221 IPR036875 GO:0003676|GO:0008270
Rops2g01724 290 MobiDBLite consensus disorder prediction 247 283 - -
Rops2g01724 290 MobiDBLite consensus disorder prediction 154 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01724 Rops-Chr2 26527763 26535293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01724 87 175 Eukaryotic Initiation Factors Gene Family AT1G71770 34.375 6.22e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01724 - - gmx:100815224 288.885