Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01688 ATGGAGATCGATCTCTCTTTGAAGATAGATTCTGATGACCAAAAAGAAGCAAAGGTAGATGAGCAAGTGAAAAAGGATGATAAGGAAGAAACTGTTCCTGAAACCACAGCTGGTGAAATAGAAGATGATGCATCTATGGTAGAAATATCTTTGCAAGATAACACAAAAACAAGCCAGTTGAGTGTCTTACAAATGGAGATGAAGAGCATGAAAGAGGAAAACAAAGTCTTAAGGAAAGTGGTGGAACAAACAATGAAAGACCACTATGATCTACAAATGAAACTTTCAGTCATCCAGGAAAACAATAAAAGAAAGCTTTCTCTCTCTCTTCAAGACAATGCAAACACTAGTGGTGAAGGACCATCAAGAATTCTTGAGATCTTTAATAAGAAAATTCAAAGATCTCCATCACCACCAAACACTGATGATAGTATAAGGAAGAGTGAATTGGGTTTATCCCTAAGGTTGCAAACAAGCCCAAGTGAGAAAGAAACGGAGGAGAATAATAAGGAAGTAAAGAAAGAACAATTGGCAAGTTTTGCATCAGTGCAGAATAAATTACAGCGTACACATGAATTGCCTGGTATTACTACACATGCTGCTTACCCTCCAAATAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAGACTGCCACGATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCGTGTCCACGAGCCTATTATCGTTGCACTGTAGCCCCTGGCTGCCCCGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTAATTACAACCTATGAAGGAACACATAACCATCCACTCCCTGTTGGTGCAACTGCTATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTTATGTTGTTGGACTCAAGCAATCCTTTTTCAAATGGCACCTCTAGTTTCACCCAAACAACCCTTCCTTACAATACCTTCCACCCATTAAACCCATCTTCCAACATTAGAACCATAAACCCCAATGATCCATCCCAAGGGATTGTCCTTGATCTCACCAATAATCTCAATGAACCACCACCACGTTTTTCCACAGGTAGCTCCTCCAAGACAACAACTGAGCCTCGTTTTTCTTGGATGCCAAACAAATACCAAAATAATGCTATTCCAATGAACAATTTTCACAACCCTCATGATAGGATTTGGAAAGGAGAAGAAAGTAAGCCACTAGATGAAAATGTGTCCGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCAGCAGCCATAACATCACTTATGAATAAAGAGAGCCAAGCTACAAATCCTATAGGTTCTTCCTTTGGTCCTAGGAGTGGACAAAATGGTAGCTCTAGTAGCAACAATTGGGTCCTTGAATCTCTTTCAACAAATGGTAAGTCCACTTGA 1422 0.4051 MEIDLSLKIDSDDQKEAKVDEQVKKDDKEETVPETTAGEIEDDASMVEISLQDNTKTSQLSVLQMEMKSMKEENKVLRKVVEQTMKDHYDLQMKLSVIQENNKRKLSLSLQDNANTSGEGPSRILEIFNKKIQRSPSPPNTDDSIRKSELGLSLRLQTSPSEKETEENNKEVKKEQLASFASVQNKLQRTHELPGITTHAAYPPNRKARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPFSNGTSSFTQTTLPYNTFHPLNPSSNIRTINPNDPSQGIVLDLTNNLNEPPPRFSTGSSSKTTTEPRFSWMPNKYQNNAIPMNNFHNPHDRIWKGEESKPLDENVSAIASDPKFRVAVAAAITSLMNKESQATNPIGSSFGPRSGQNGSSSSNNWVLESLSTNGKST* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01688 473 Coils Coil 60 87 - -
Rops2g01688 473 SUPERFAMILY WRKY DNA-binding domain 214 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g01688 473 MobiDBLite consensus disorder prediction 352 376 - -
Rops2g01688 473 Pfam WRKY DNA -binding domain 222 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g01688 473 FunFam probable WRKY transcription factor 31 206 283 - -
Rops2g01688 473 MobiDBLite consensus disorder prediction 133 159 - -
Rops2g01688 473 MobiDBLite consensus disorder prediction 435 473 - -
Rops2g01688 473 MobiDBLite consensus disorder prediction 130 172 - -
Rops2g01688 473 MobiDBLite consensus disorder prediction 1 38 - -
Rops2g01688 473 ProSiteProfiles WRKY domain profile. 216 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g01688 473 SMART WRKY_cls 221 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g01688 473 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 31 438 IPR044810 GO:0003700
Rops2g01688 473 Gene3D WRKY domain 206 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g01688 473 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01688 Rops-Chr2 25561683 25564043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01688 1 344 WRKY Transcription Factor Family AT1G68150 45.856 1.07e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops2g01688 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01688 - - gmx:100820209 678.707