Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01643 ATGGAGGAGCCACTTTGGTTTCGCTTCTGGGTTACATTGCAATGCTTTATGGCCTTCTTAGCTCTAAGTGAAACCAACTTTACCACAGATAAGTTAGCACTTGTTGCTCTCAAATCTTGCATCACTCGGGACCCTTACCATTTTCTGTCTCATAACTGGTCTGTCTCCTCTTCTGTATGTAACTGGGTCGGTGTCACTTGTGATGCTCACCATGGCAGGGTGAGGACCTTGAATCTTGGTGACATGGGTCTTAGTGGCACCATACCCTCTCACATAGGAAACCTCACCTTCCTTATTGAACTTCACCTTGGTGGGAACAGTTTCCATGATCAATTGCCACCAGAACTAGTCCACCTGCGTAGATTGAAGTCACTCAACTTGAGCTACAACCAATTCAGTGGAAATGTTCCAGCATGGATTGGAGGCTTATCTGTACTCAGATACTTGAAACTTGCAAACAATACATTTAGTGGTTTCATTCCAAAATCATTATCCAATTTGACAATGCTAGAGATCTTGGATTGGAACGAAAATCTCATTGAAGGAACCATTCCACCTGAAGTTGGCAAAATGACTCACTTGAGGGTTTTATCGATAGCTTCAAACACTCTTTCGGGGACCATTCCTCCAACGATTTCTAACCTTTCTTTCCTCGAGCGAATCAGTTTATCATATAACTCCTTGTCAGGAGGCATTCCGAGGGAAATTGGTGACCTTCCAAAGCTAAGAATAATGTATCTTGGGAATAATCCACTTTCTGGCTCCATACCATCAACAATCTTCAATCACTCAATGCTGCAAGATATTGAACTTGGCTCCAGTAATTTATCTGGCATTCTTCCACCAAACATATGCCTTGGACTTCCACAAATCCAAGTATTTTATCTAAGTTTCAATCAGTTCTCTGGTAAAATGCCATATGTTTGGCATCAATGCAAAGAGTTGACAGATGTAGACTTGTCAAAAAATAATTTCAGCAGAGGAAGCATACCACATGATATTGGAAACTTAACTACGCTTGCCTCCTTATATCTTGATGAGTGCAACTTGGAAGGAGAAATCCCATCCTTTCTTTTTAATATATCTTCAATGAGAACACTCAATCTTGAAGGAAACAAGTTGAATGGTACCCTAACAGAAGAGATGTTTGATCAGCTTCAATTACTTGAATTCTTGTATTTGGATAACAACCAATTTGTGGGAAGCATTCCAAGATCTATTAGCAATTGTACGATGCTCCAAGAATTATATCTGGGTGACAACTCTTTTACAGGTTCTATACCAAAGGAGATTGGTGATCTTCCTATGCTTGCACGATTAGTTATGGGAAGTAACCGTTTAACTGGACCTATTCCCTCAAATATCTTCAACATATCATCACTGAGTTACTTGTTTCTGGCAAATAATTCCCTCTCAGGATTTCTCCCATCACACATCAGCTTAGAAAACCTAGTGGAACTGAACTTGAACACAAACCAACTTGGTGGAAACATTCCAAGCAGCATATCCAATGCTTCTAAGCTTAACTACATGGATTTGAGTGTGAATAAGTTCAATGGAGTTATACCCAATGCTTTTGGGGATTTGAGACACCTTCAGGGGCTTGGAGTAGCATACAATAATTTAACTACAATTTCTTCCGCAATAGAATTAAGCTTCCTTAGCTCTTTGAATTTTCTTCAAATAACAGGGAATCCAATGAATGGACACCTTTCTAAATCAATCGGAAATATGTCCAATTTGGAACAGTTCTTTGCTGATGCTTGCAGTATTGATGGTAAAATTCCATTAGAAATTGGAAATTTAAGCAATTTGTTTATACTAAGTTTGTATCAGAATGATTTAAGTGGATCGATTCCAACAACAATCAAAGGTTTGCAGTCTCTTCAATATTTGAATCTTGGAAACAACCAATTGCAGGGAACTATCATTGATGAACTTTGTGAAATTCACCAACTGAGTCAGTTGTATATAACAGAAAATAGGATGATTTCTGGAATGATCCCAGCATGCTTTGGAAATCTCACTTCTCTAAGAAAGTTGTACTTGAACTCTAACAAACTAAATAAGGTGTCGTCTTCTCTTTGGAGTCTCAAAGACATTCTGGAGGTAAACTTATCCGACAATGCTTTAACTGGATCTCTTCCACTTGGTATCGGAAATTTAAAAGCTGTTGTATTGTTGGATCTATCAAATAATCAGATTTCAGGAAACATTCCTAAGGCCATTGCTGGACTGCAAAATTTGCAAACACTCAACTTAGCTCATAATAAATTGCTAGGGAATATTCCTGATTCATTTGGCAGTTTGATAAGTTTGACATACTTGGACTTATCCCAAAACGAGTTGTTTGGTGTGATTCCAAAATCCTTGGAGTCACTTCAATATCTCAATTTTATCAATCTTTCTTATAATAGGTTAGAAGGAGAGATTCCCAATGGTGGACCTTTTAAAAATTTCTCAGCTCAGTCTTTCAGATTTAATAAAGCACTTTGTGGAGATGCTCGACTACAAGTGCGACCATGCAGTAAAATGAAGAGGAAAAGTTCAAATGCAATTATGTTTTTCATCAAATGCATATTGCCTGTAATGTTGTCAACAATTTTGGTTGTTTTATGTGTATTCCTTCTAAGAAGGCGTCAAAGAAAGAATGATGGTGAATCTATTGAAGCAAGTTTATCAACATTACCAACAACAAGAATGATTTCCTACTATGAACTTTCTCAGGCAACCAATGGATTTGATGAGAGCAATTTACTTGGTAAGGGCAGTTTTGGATCAGTGTTCAAAGGTATACTTCCAAATGGGATGATTGTTGCAGTCAAATTATTTAATTTGGACTTAGAATTAGGACCAAAGAGCTTTCTTGTAGAATGTGAAGCAATGCGCAATCTGCGTCATCGAAATCTCATCAAGATAATCGGTTGTTGTTCCAGTGTTGATTACAAGCTTTTAGTAATGGAGTTCATGCCCAATGGGAGCCTTGAAAGTCGGTTGTATTCTCATAACTATTGTTTGGCATTCATGCAAAGGCTAAATATAATGATAGATGTAGCATCTGCATTGGATTATATGCATCATGGTTCTTCACCAACCGTGATTCACTGTGATGTAAAGCCTAGTAATGTCTTATTGGATGAAGACATGGTTGCTCTTGTCAGTGACTTTGGCATTGCCAAACTTTTAGATGAAGGACAATCTAAAGAATACACCAAGACCATGGCTACACTTGGCTACATTGCACCAGAGTATGGATCCAAGGGGACTATCTCTACAAAAGGAGATGTATACAGTTTTGGGATTATGTTGATTGAAACATTCACAAGAAAGAAGCCAACAGATGAGTTGTTTGTTGCTGGATTGAGCATGAAAGGTTGGATCAGTGAATCATTACCCCATGCAATGACTCGAGTTGTGGATTCCAATTTGTTACATGATGAAGGACTTTGTGCTGATGATATAGTATCATCTATATCATCTATTTTTAGGTTGGCCTTGAATTGTTGTGCAGATTTACCTGAAGAAAGAATGAATATGACAGATGTTGCTGCATCATTGAACAAAATCAAGTTCATGTTTCCTAAAACCGATGACAACCACAATCAACGACAAGCATATCCAACCTAA 3627 0.3788 MEEPLWFRFWVTLQCFMAFLALSETNFTTDKLALVALKSCITRDPYHFLSHNWSVSSSVCNWVGVTCDAHHGRVRTLNLGDMGLSGTIPSHIGNLTFLIELHLGGNSFHDQLPPELVHLRRLKSLNLSYNQFSGNVPAWIGGLSVLRYLKLANNTFSGFIPKSLSNLTMLEILDWNENLIEGTIPPEVGKMTHLRVLSIASNTLSGTIPPTISNLSFLERISLSYNSLSGGIPREIGDLPKLRIMYLGNNPLSGSIPSTIFNHSMLQDIELGSSNLSGILPPNICLGLPQIQVFYLSFNQFSGKMPYVWHQCKELTDVDLSKNNFSRGSIPHDIGNLTTLASLYLDECNLEGEIPSFLFNISSMRTLNLEGNKLNGTLTEEMFDQLQLLEFLYLDNNQFVGSIPRSISNCTMLQELYLGDNSFTGSIPKEIGDLPMLARLVMGSNRLTGPIPSNIFNISSLSYLFLANNSLSGFLPSHISLENLVELNLNTNQLGGNIPSSISNASKLNYMDLSVNKFNGVIPNAFGDLRHLQGLGVAYNNLTTISSAIELSFLSSLNFLQITGNPMNGHLSKSIGNMSNLEQFFADACSIDGKIPLEIGNLSNLFILSLYQNDLSGSIPTTIKGLQSLQYLNLGNNQLQGTIIDELCEIHQLSQLYITENRMISGMIPACFGNLTSLRKLYLNSNKLNKVSSSLWSLKDILEVNLSDNALTGSLPLGIGNLKAVVLLDLSNNQISGNIPKAIAGLQNLQTLNLAHNKLLGNIPDSFGSLISLTYLDLSQNELFGVIPKSLESLQYLNFINLSYNRLEGEIPNGGPFKNFSAQSFRFNKALCGDARLQVRPCSKMKRKSSNAIMFFIKCILPVMLSTILVVLCVFLLRRRQRKNDGESIEASLSTLPTTRMISYYELSQATNGFDESNLLGKGSFGSVFKGILPNGMIVAVKLFNLDLELGPKSFLVECEAMRNLRHRNLIKIIGCCSSVDYKLLVMEFMPNGSLESRLYSHNYCLAFMQRLNIMIDVASALDYMHHGSSPTVIHCDVKPSNVLLDEDMVALVSDFGIAKLLDEGQSKEYTKTMATLGYIAPEYGSKGTISTKGDVYSFGIMLIETFTRKKPTDELFVAGLSMKGWISESLPHAMTRVVDSNLLHDEGLCADDIVSSISSIFRLALNCCADLPEERMNMTDVAASLNKIKFMFPKTDDNHNQRQAYPT* 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01643 1208 ProSiteProfiles Protein kinase domain profile. 914 1192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01643 1208 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 69 309 - -
Rops2g01643 1208 Gene3D Phosphorylase Kinase; domain 1 876 989 - -
Rops2g01643 1208 Pfam Leucine Rich Repeat 772 794 IPR001611 GO:0005515
Rops2g01643 1208 SMART serkin_6 914 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01643 1208 SUPERFAMILY RNI-like 479 813 - -
Rops2g01643 1208 ProSitePatterns Protein kinases ATP-binding region signature. 920 942 IPR017441 GO:0005524
Rops2g01643 1208 SUPERFAMILY Protein kinase-like (PK-like) 892 1186 IPR011009 -
Rops2g01643 1208 FunFam Serine-threonine protein kinase plant-type 894 989 - -
Rops2g01643 1208 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 527 1187 - -
Rops2g01643 1208 SMART LRR_sd22_2 602 628 - -
Rops2g01643 1208 SMART LRR_sd22_2 722 748 - -
Rops2g01643 1208 SMART LRR_sd22_2 770 796 - -
Rops2g01643 1208 SMART LRR_sd22_2 191 217 - -
Rops2g01643 1208 SMART LRR_sd22_2 481 507 - -
Rops2g01643 1208 SMART LRR_sd22_2 675 697 - -
Rops2g01643 1208 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1033 1045 IPR008271 GO:0004672|GO:0006468
Rops2g01643 1208 SUPERFAMILY L domain-like 336 477 - -
Rops2g01643 1208 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Rops2g01643 1208 SMART LRR_typ_2 119 143 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 481 505 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 746 769 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 95 118 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 529 552 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 434 458 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 386 410 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 626 651 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 361 385 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 675 698 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 770 793 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 722 745 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 191 215 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 239 263 IPR003591 -
Rops2g01643 1208 SMART LRR_typ_2 288 311 IPR003591 -
Rops2g01643 1208 Pfam Protein kinase domain 915 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01643 1208 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Rops2g01643 1208 Gene3D Transferase(Phosphotransferase) domain 1 990 1205 - -
Rops2g01643 1208 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 550 846 - -
Rops2g01643 1208 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 310 549 - -
Rops2g01643 1208 Gene3D Ribonuclease Inhibitor 190 263 IPR032675 -
Rops2g01643 1208 Gene3D Ribonuclease Inhibitor 264 329 IPR032675 -
Rops2g01643 1208 SUPERFAMILY L domain-like 41 376 - -
Rops2g01643 1208 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Rops2g01643 1208 Pfam Leucine rich repeat 652 711 IPR001611 GO:0005515
Rops2g01643 1208 Pfam Leucine rich repeat 339 399 IPR001611 GO:0005515
Rops2g01643 1208 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Rops2g01643 1208 Pfam Leucine rich repeat 721 759 IPR001611 GO:0005515
Rops2g01643 1208 Gene3D Ribonuclease Inhibitor 546 851 IPR032675 -
Rops2g01643 1208 Gene3D Ribonuclease Inhibitor 330 545 IPR032675 -
Rops2g01643 1208 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 990 1199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01643 Rops-Chr2 24813753 24820730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01643 11 1190 Receptor kinase-like Gene Family AT5G46330 33.416 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops2g01643 Pkinase 7.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01643 - K13420 gmx:100784397 1764.59