Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01614 ATGGCAAAAAAGACCAGAGGGTCTCCCAAGAACACCTCTCACTCAGCTCCTTCTTCAGCCTCTGCCTCCTCCGGCAAACTAATATTGAAGATTAAATCAAATGAGGGAATGAAGAGATCAGTGCGGCAGACTAAGTCAAGAAAGAAACCCAAAGCACAGCAAAAAAAGAACAAACAAAAGATTGATGCTAAGAAGCCAAAGAAACCTCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCGATGCGTGATATTGGCAAGGCATGCGGAGAGAAGTGGAAAACAATGACTTATGATGAGAAGGTTCAATACTATGATATAGCAACAGAAAAACGTGCTGAATTCGATAGAGCAATGGCAGAATATAACAAGAAATTGGAAAGCGGTGATTATGATGAAACTGATGAGGAGTCAGAGTTTGATGGGTAA 465 0.4065 MAKKTRGSPKNTSHSAPSSASASSGKLILKIKSNEGMKRSVRQTKSRKKPKAQQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYDEKVQYYDIATEKRAEFDRAMAEYNKKLESGDYDETDEESEFDG* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01614 154 MobiDBLite consensus disorder prediction 1 69 - -
Rops2g01614 154 SUPERFAMILY HMG-box 57 140 IPR036910 -
Rops2g01614 154 Gene3D High mobility group box domain 59 150 IPR036910 -
Rops2g01614 154 SMART hmgende2 65 136 IPR009071 -
Rops2g01614 154 Coils Coil 154 154 - -
Rops2g01614 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 33 150 IPR031061 -
Rops2g01614 154 MobiDBLite consensus disorder prediction 1 28 - -
Rops2g01614 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 66 135 IPR009071 -
Rops2g01614 154 Pfam HMG (high mobility group) box 66 135 IPR009071 -
Rops2g01614 154 CDD HMG-box_AtHMGB1-like 67 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01614 Rops-Chr2 24337251 24341889 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Rops2g01614 HMG_box 1.4e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01614 - - vum:124844238 217.624