Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01612 ATGGTTCATAGAAAAATTGAGATGAAATTGGTGAAGAACAAAAGTGCTAGGTTGGTCACATTTTCCAAGCGTAGGAATGGCCTTTTTAAGAAAGCAAGTGAGTTGTCAATTCTTTGTGGTGTTCAAGTGGGCATGGTTGTGTTCTCCCCAAGTGGTAAGCCTTTCTCTTTTGGTTATCCAAGCATTAAAGCTGTGACTAATAAGTTCCTTCACCAAAGGCATGGATATAATAGGGGTCAAGGTGGACCTTCCAAAAATGACAAGGTTCACAAGCTTAGTCATCAGCTTGATGATTTGATGAATCAGCTGCAGGTGGAGAAGAAGAAGGAGAAGATACTTGACAATAAAAATAAACTCATCAAAGGTAGATTCTCCAATATTGGTTTTAATTTAGAGGAGCTTCAAAAATTTAAGACTTCATTGAAAAAGCTCAGTGATGATTTGACATTGTCCATGAATGAGATGGAGGCTGCATCATCTTTGCTTCTCCTTGGTGAGAAAAACATGTAG 510 0.3824 MVHRKIEMKLVKNKSARLVTFSKRRNGLFKKASELSILCGVQVGMVVFSPSGKPFSFGYPSIKAVTNKFLHQRHGYNRGQGGPSKNDKVHKLSHQLDDLMNQLQVEKKKEKILDNKNKLIKGRFSNIGFNLEELQKFKTSLKKLSDDLTLSMNEMEAASSLLLLGEKNM* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01612 169 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Rops2g01612 169 PANTHER MADS BOX PROTEIN 4 149 - -
Rops2g01612 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops2g01612 169 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Rops2g01612 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops2g01612 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops2g01612 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops2g01612 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops2g01612 169 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Rops2g01612 169 Coils Coil 89 116 - -
Rops2g01612 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01612 Rops-Chr2 24317017 24317526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01612 1 167 Type I MADS-box Gene Family AT2G34440 41.379 1.42e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops2g01612 SRF-TF 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01612 - - lang:109341334 156.377