Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01611 ATGGAGGGAAAAAAGACCAGAGGAAAACAAAAACGAGAGATGAAGAAAATTGATAATGAGAGAGATCTTTCCATCACTTTCACAAAGCGAAAATCTGGCATTAACAAGAAGGCCAGTGAGTTATCAACACTTACTGGGGCAATTGTTGATGTTCTCATGTTTTCTCCATCTGGAAATTCATTTTCTTATGGGGACCCTTCTCTTCAGTCTATGACAAGGACTAGTTTGGATGAAAGACACCCTTCAGAAGGTGGCATCTATAATCAGCTTGTGAAGGATCGAAAAAGAAGGGAGATTCAGCAACTCAATGTAAAACATGATGCACTTATGGATCAACTGTATGCTGAGAAGGCACGAGAGAAAGTCCTAGAGAGGAGTTTGAAAACAAGGAATAGCAGCGGTTGGTGGGAGGACAATGTGCAAGATCTTGGTTATGAACAAGCCAAAGCAATGGAGGTATCTTTTGTTGAATTTGAAAAGAAATTGATAGATGAATTGTCAATCAAGTCTGGTGTGAATGTTTCTCGTGATTTGGCTCCCATGGATCAATCGAGTGGAGATGGAGCCAATTCATATCTTACTCATGCATTTGGGGGTGATATATCTGAAATTGTATTTGGTGCCAAGAATAGTGCCAATCTAATTGGTACAAGTGAGAGTATGCCCAATTTATATTTTAGTCACACAAATGAAGAGCAAACATTCAATTTAATTCCCTGTGATGAACAAGGGGGAGAGCTATTTGATGTTGTCTTTCCTCCCAAAAACCAAGCCCTTGGAGCCAGCTTTTTTCTTGATAATGCAAATGGCAATGGTAAATCTTCTTTTACATCTCTCCCTACAAATCAAACACCAGGACTCAACCTCACTGATGCAAGTGGAAGTGGTAATCATGCTCTTGTCTTCTCCCCTTTTAATCAATACCAAGGAGATAATCCACTTCTATGTAATACAGGTAATGAAAATTCTGGTGGAAGTGGTGGTCATGCTCTTGCCTTCCCCCCTTCAATTCAATGCCAAGGAGATCATCCATTTCTGTATAATGCAAGTAATGGCAATGCTGATGGAAATGGTAGTCATGCTCTTAACTTCTCCCTTTCAAATCAACACCAAGAGGCTAATACATTTCTTTTTCATGCAATTCAAGAGAATGGTGGTTTTTCTTTTCCTCCAATCAATGGTTATGGCCATGGGTACTTCTAA 1203 0.3957 MEGKKTRGKQKREMKKIDNERDLSITFTKRKSGINKKASELSTLTGAIVDVLMFSPSGNSFSYGDPSLQSMTRTSLDERHPSEGGIYNQLVKDRKRREIQQLNVKHDALMDQLYAEKAREKVLERSLKTRNSSGWWEDNVQDLGYEQAKAMEVSFVEFEKKLIDELSIKSGVNVSRDLAPMDQSSGDGANSYLTHAFGGDISEIVFGAKNSANLIGTSESMPNLYFSHTNEEQTFNLIPCDEQGGELFDVVFPPKNQALGASFFLDNANGNGKSSFTSLPTNQTPGLNLTDASGSGNHALVFSPFNQYQGDNPLLCNTGNENSGGSGGHALAFPPSIQCQGDHPFLYNASNGNADGNGSHALNFSLSNQHQEANTFLFHAIQENGGFSFPPINGYGHGYF* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01611 400 Gene3D - 19 84 IPR036879 GO:0003677|GO:0046983
Rops2g01611 400 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Rops2g01611 400 CDD MADS 8 64 - -
Rops2g01611 400 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Rops2g01611 400 Coils Coil 92 112 - -
Rops2g01611 400 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Rops2g01611 400 SUPERFAMILY SRF-like 7 73 IPR036879 GO:0003677|GO:0046983
Rops2g01611 400 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Rops2g01611 400 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Rops2g01611 400 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Rops2g01611 400 PANTHER MADS BOX PROTEIN 9 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01611 Rops-Chr2 24307859 24309164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01611 4 177 Type I MADS-box Gene Family AT4G36590 37.989 4.71e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops2g01611 SRF-TF 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01611 - K12412 ccaj:109813207 283.878