Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01605 ATGGACGTGAGCGTAGAAGTTAGGGCTCGTCACAAGCAAGAATTCGCCGATTTCTTGAATCAAGATGTCGGAAAGGGCATATACATGGACGAGATCAGAGCTCTCATTAACCACAAGCGTCGCCGTCTCATCGTCAACATCTCCGATCTCCACAACTTCTACGACTTAGGCAACAGGGTTTTGAGGAATCCAAGTGAGTACATACAATCGTTCTGTGATGCGGTCACGGATGCTGTACGTTCTATTGATCCAAAGTATTTGAAGGAAGGGGAACAAGTGCATGTGGGATTTGAAGGCCCTTTTGTTTCTCGAAGGGTCACGCCCAGGGAACTTTTATCTGAATTCATAGGTTCTATGGTCTGTGTTGAGGGCATTGTCACCAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAGACTTCACTACTCGTGAATATCGAGATATTACATCCAATTTGGGTTTGCCCACGGGGTCTGTTTATCCTACAAGGGATGAAAGGGGCAACTTGCTTGTGACCGAGTATGGATTGTGCAAATATAAAGACCATCAAACCTTGTCCATGCAAGAAGTTCCAGAGAATTCTGCCCCCGGTCAGCTCCCAAGAACAGTGGATGTCATAGTAGAGGATGACCTTGTTGATTCTTGCAAGCCAGGAGATCGTGTGTCGATTGTGGGGATATATAAGGCTCTTCCAGGGAAAAGCAAAGGCGGTGTAAATGGAGTATTCAGGACTGTGCTCATAGCCAATAATGTTTCTCTTCTCAACAAAGAGGCTAATGCGCCAGTCTACAGTCCTGAAGACCTAAAAAACATAAAAAAGATTGCCGAGAGAGTTGATACATTTGACCTGCTTGGTAACTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAAAAAGCAGTAATTTTATTGATGCTTAGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTCGGTGATCCCTCTGTTGCCAAGTCTCAACTCTTAAGAGCAATTATGAATATCGCTCCCTTGGCCATATCAACAACAGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCGGTTACTTCAGATCAAGAAACAGGGGAAAGGAGGCTAGAAGCTGGGGCGATGGTTCTTGCTGATAGAGGTGTTGTCTGCATTGATGAATTTGACAAAATGAATGATCAAGATCGTGTCGCTATACATGAAGTTATGGAACAGCAAACAGTAACTATTGCTAAAGCTGGTATCCATGCATCACTTAATGCCCGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACATATGATCGTTCACTGACTCCAACCAAAAATATCGGACTCCCAGATTCCTTGCTTTCTCGATTTGATCTACTGTTCATTGTATTGGATCAAATGGATCCTGATATTGATCGTCAAATATCAGAGCATGTTCTGCGCATGCATCAATATCGTTCTACCATCGATGGAGGTGAGGCAGCACTTAATGGGAGCTCAAGATATGGAGGAGAAGATGAAACTGACATGGAATCATCTGTCTTTGTCAAACATAACAGAATGCTGCATGGGAAGAGAAGTCGCAAAAGCGATAAGCTTACAATTAAGTTTCTTAAAAAGTATATCCATTATGCTAAGCATAGGATTCAACCTGAGCTGACTGATGAGGCATCTGACCAGATCGCCACAGCCTATGCTGAGCTCAGAAATGCAAGTTCAAATGCGAAGACTGGAGGAACGCTTCCTATAACTGCCAGAACATTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTGAAGGTTCTTAATTTTGCAATATATCACAAAGAACTGACAGAAATGGAGGACCGTGACCGTGAGCAAGAGAGGGAGAGAGAACAGGAGAGAAAGCGTAGGGCTGATGGTGAAAATGATGGTCCTGATCTTGGTTCTAAAAAGAAAAGAGGGCCATCGTCAGATGCTATGGAAGTGGATGATACATCAGCAACCCAACCTGCTGACAGTCTCACTCCTGAAAGAATTTCAGCATTTACTTCTCTATTTGGTCAGCATATGCGGGCCAAGCACTTGGATCGCATACCTGTTGTAGACATAGAGAATGTTGTCAACCAAGGGGCAGATTACACTTACAACTCGGCAGATATATTACTCATATTAAAGAAATTGGAAGATGACAATAGAGTGATGGTAGCCGATGGAATGGTACATATGATATCATAA 2319 0.4338 MDVSVEVRARHKQEFADFLNQDVGKGIYMDEIRALINHKRRRLIVNISDLHNFYDLGNRVLRNPSEYIQSFCDAVTDAVRSIDPKYLKEGEQVHVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGDFTTREYRDITSNLGLPTGSVYPTRDERGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVSIVGIYKALPGKSKGGVNGVFRTVLIANNVSLLNKEANAPVYSPEDLKNIKKIAERVDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHQYRSTIDGGEAALNGSSRYGGEDETDMESSVFVKHNRMLHGKRSRKSDKLTIKFLKKYIHYAKHRIQPELTDEASDQIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEDRDREQEREREQERKRRADGENDGPDLGSKKKRGPSSDAMEVDDTSATQPADSLTPERISAFTSLFGQHMRAKHLDRIPVVDIENVVNQGADYTYNSADILLILKKLEDDNRVMVADGMVHMIS* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01605 772 MobiDBLite consensus disorder prediction 647 687 - -
Rops2g01605 772 Coils Coil 644 664 - -
Rops2g01605 772 CDD MCM3 292 638 - -
Rops2g01605 772 MobiDBLite consensus disorder prediction 647 702 - -
Rops2g01605 772 Pfam MCM OB domain 109 239 IPR033762 -
Rops2g01605 772 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Rops2g01605 772 Gene3D - 271 661 IPR027417 -
Rops2g01605 772 Gene3D - 2 99 - -
Rops2g01605 772 SMART mcm 104 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 Pfam MCM N-terminal domain 12 97 IPR027925 -
Rops2g01605 772 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 FunFam DNA helicase 5 104 - -
Rops2g01605 772 FunFam DNA helicase 135 189 - -
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 Gene3D - 109 239 IPR012340 -
Rops2g01605 772 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Rops2g01605 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 651 IPR027417 -
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 627 642 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Rops2g01605 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Rops2g01605 772 Pfam MCM AAA-lid domain 553 636 IPR041562 -
Rops2g01605 772 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 9 670 IPR031327 GO:0003677|GO:0005524|GO:0032508
Rops2g01605 772 Gene3D - 135 189 - -
Rops2g01605 772 SMART AAA_5 331 484 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01605 Rops-Chr2 24214296 24220285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01605 1 572 Core DNA Replication Machinery Family AT5G46280 80.382 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01605 K02541 - jre:108990186 1290.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01605 2 24214296 24220285 Rops2g01605 2 24214296 24220285 ECH