Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01594 ATGGCCGAGGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTCAAATTGTATTATGATGCTAAGTTTGGTAGGAAGAAAGCCGTGGAGAATGGCGAGACTGCTGATAAAGCGGTCAGTAATGGAAATTCGTTGGGCATTGCATCCAATGGCAATCTGAATGGCAAAAGAACATCGGATAGGGCTATTTACGAGGAGTTCCAAAACCAGGGGCAGAATCCGACACAGACAAATGGTCTTTCACCGGACAACATGGATGAAAGGCCGCAGAAGCCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGTGGGAGTCCAAATGTGAAGTGGGAAAGCATCAAGGGATTAGAGAATGCCAAACGTTTACTGAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTACTTTACTGGTCTGTTATCACCATGGAAGGGCATTCTCCTTTTTGGCCCTCCGGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAGGACTACATTTTTTAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAGTGAAGGTGTTATTTGAGCTTGCAAGACATCATGCTCCCTCAACAATATTTCTTGATGAAATTGATGCAATCATAAGTCAACGCGGTGAAGCACGCAGTGAACATGAAGCAAGTAGACGGTTAAAAACTGAGCTACTCGTTCAGATGGACGGTTTAACACGGACAGATGAACTTGTTTTTGTTTTGGCGGCAACAAACCTTCCCTGGGAATTGGATGCAGCGATGCTCCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCGAGAAGATCAATGTTTGAGGAACTCCTTCCTTCACAGCCTGATGAGGAACCGATACCGTATGATTTACTGGTGGACCGGACAGAAGGATATTCAGGTTCAGATATCCGATTACTTTGCAAAGAGACAGCAATGCAGCCCTTGAGACGCTTAATGTCACAACTTGAACAGAGCCAAGAGGTGGTGCCTGAAGAAGAGTTGCCAAAAGTAGGGCCAGTGATACCCGAAGATATAGAGACAGCTCTAAAGAACACAAGGCCATCTGCTCATCTCCATGCCTACAAATATGACAAGTTTAATGCTGATTATGGTAGTCAAATACTTCAATGA 1212 0.448 MAEEPMPTRWSFQDFKLYYDAKFGRKKAVENGETADKAVSNGNSLGIASNGNLNGKRTSDRAIYEEFQNQGQNPTQTNGLSPDNMDERPQKPLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECRTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLVQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRSMFEELLPSQPDEEPIPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMSQLEQSQEVVPEEELPKVGPVIPEDIETALKNTRPSAHLHAYKYDKFNADYGSQILQ* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01594 403 MobiDBLite consensus disorder prediction 36 54 - -
Rops2g01594 403 MobiDBLite consensus disorder prediction 33 54 - -
Rops2g01594 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 386 IPR027417 -
Rops2g01594 403 Pfam ATPase family associated with various cellular activities (AAA) 159 289 IPR003959 GO:0005524|GO:0016887
Rops2g01594 403 CDD RecA-like_VPS4-like 125 288 - -
Rops2g01594 403 MobiDBLite consensus disorder prediction 67 84 - -
Rops2g01594 403 Gene3D - 291 379 - -
Rops2g01594 403 Pfam AAA+ lid domain 316 352 IPR041569 -
Rops2g01594 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 291 379 - -
Rops2g01594 403 PANTHER AAA DOMAIN-CONTAINING 61 399 - -
Rops2g01594 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 118 302 - -
Rops2g01594 403 Gene3D - 118 392 IPR027417 -
Rops2g01594 403 MobiDBLite consensus disorder prediction 67 95 - -
Rops2g01594 403 SMART AAA_5 155 292 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01594 Rops-Chr2 24083192 24094202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01594 153 362 Calmodulin-binding Proteins AT3G56690 36.620 4.19e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01594 K07767 - gmx:100794098 706.057