Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01544 ATGGCTGAAACTCAATCTCAGTCTCCCATCATAAGCACACCACATCATGAACAAGTTGGTGGTTTCGATTGGATGGTTCTTGTGGCAGCCATTCTATGTGCCTTTGTTTGTGCTCTTGGCCTTAACACCATGTTACACTGTGTGTTTCAATGTGCCACTCGTGTCCTCACTGAGCCTTTACAATGGATTGCTTCTCGGAGGCTCAATTCAGGGCTTAAGAGGAAAGAAATGGTAGCTTTGCCAACCTCAACTTATAGAAGTCACTCAGCTTCTCCATCTTCTTCAGCTTCTAGTTGTGTCATTTGCTTAGCTGAATTCTCTGATGGGGACCTCATAAGGTTCCTCCCAAAGTGCAATCACCATTTCCATGTTGTTTGTATTGACAAGTGGTTGCTCTCTCATTCTTCTTGTCCTACTTGCAGGCATCTTACTCAAGTCTAA 441 0.4399 MAETQSQSPIISTPHHEQVGGFDWMVLVAAILCAFVCALGLNTMLHCVFQCATRVLTEPLQWIASRRLNSGLKRKEMVALPTSTYRSHSASPSSSASSCVICLAEFSDGDLIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRHLTQV* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01544 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 145 IPR013083 -
Rops2g01544 146 CDD RING-H2_EL5-like 99 141 - -
Rops2g01544 146 PANTHER RING-H2 FINGER PROTEIN ATL78 15 143 IPR044602 GO:0016567|GO:0016740
Rops2g01544 146 Pfam Ring finger domain 98 141 IPR001841 -
Rops2g01544 146 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Rops2g01544 146 SMART ring_2 99 140 IPR001841 -
Rops2g01544 146 SUPERFAMILY RING/U-box 98 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01544 Rops-Chr2 22935015 22935539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01544 1 142 C3H Transcription Factor Family AT3G10910 40.506 5.26e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01544 - - gmx:100779286 226.483