Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01540 ATGGCATCAAACTCCATGGCTGGCTTAACCACTGGTTCTCATTCCCGTTTCTCACATGACTCAGATGAGCATCGACCTGCTGCCCTTCAATCTGCATCAAAAGTATGTAGAGTTTGTAGTGATCAGATTGGATATAAGGAAGATGGGGAGCTGTTTGTGGCTTGTCATGTGTGTGGTTTTCCTGTTTGTCAACCCTGTTATGAGTATGAGAGAAGTGAAGGGAGCCAGTGCTGTCCTCAATGCAGCACTCGCTATAAGCGTCACAAAGGTTGTCCTAGAGTAGCTGGAGATGAAGAGGAGCACTTCGATGCAGATGATTTTGATGATGAGTTTCAGATCAAGAATCACCATGATGATCCAGACAGGAAACATAATGAAAGTGAAGACTATAAGGAACAGAAGTGGCATCCCAATGGTCAAGCTTTCTCTTCAGCTGGAAGTGTGGCAGATAAGGAATTTGAAAGGGAGAAAGAATTCTACAGTAATGCAGAATGGGAAGAAAGAGTGAAGAAATGGAAAGTCAGACAAGAAAAGAAAGGTCTGCTTAACAAAGAGGAAGGAAATGATGACCAAGGTCAAGAAGACTACCTTTTGGCAGAAGCAAGGCAACCATTGTGGCGTAAGGTTCCGATACCTTCAAGCCTAATCAACCCATATCGCATAGTCATCATCATGAGACTCATTATCTTAGCTTTCTTCCTCCGCTTCCGTATCTTAACACCAGCATATGATGCATATCCACTATGGCTTATCTCAGTAATATGTGAAATATGGTTTGCACTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATCACACGTGAAACTTACTTAGACCGTTTGTCCATAAGGTTTGAACGTGAAGGGGAACCAAACCTTCTAGCCCCAGTTGATGTTTTTGTGAGTACTGTGGACCCTTTGAAGGAACCACCTATTATAACAGCAAACACTGTTCTTTCAATCCTCTCTGTTGATTATCCAGTTGAGAAGGTTTCATGCTATGTGTCTGATGATGGTGCATCCATGCTTCTGTTTGATACACTCTCAGAAACTTCTGAGTTTGCAAGAAGATGGGTTCCTTTTTGCAAGAAGTATAACATTGAGCCAAGGGCTCCTGAGTTCTATTTTAATCAGAAGATTGATTACTTGAAAGATAAGGTGCATCCCACCTTTGTGAAGGAACGTAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTGAAAATTAATGCTTTAGTGGCAAAAGCTCAGAAAAAACCAGAAGAAGGGTGGGTGATGCAAGATGGCACCCCATGGCCTGGGAACAACACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCACTAGACGTGGAAGGCAAGGAACTGCCACGACTTGTGTATATTTCACGTGAAAAGCGTCCAGGCTATCAACACCACAAGAAAGCTGGTGCTATGAATGCATTAGTTCGAGTTTCTGCTGTGCTTACAAATGCACCTTTCATGTTGAATCTGGATTGTGACCATTACATCAACAATAGCAAGGCTATAAGAGAGGCTATGTGCTTTTTAATGGACCCTCAGCTTGGGAAGAAGCTCTGTTATGTCCAATTTCCACAAAGATTTGATGGTATTGATCGACATGATAGATATGCTAATCGCAACACTGTATTCTTTGATATCAATATGAAAGGCCTTGATGGGATTCAAGGTCCAGTGTATGTTGGTACCGGAACTGTATTCAATAGGCAGGCATTATATGGATATGATCCACCAGTATCTGAGAAAAGGCCAAAGATGACTTGTGATTGCTGGCCTTCATGGTGTTGCTGTTGTTGTGGTGGTTCAAGGAAATCCAAGTCAAAAAAGAAATCAGGAGGAGGGGGGAGTCTCTTTAGTAGATTATACTCCAAGAAGAAGAAAATGATGGGGAAGAATTATGTTAAGAAAGGCTATGAGCCCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGACAAGCTAGAGAAATCATCCCTTATGTCACAGAAACAATTTGAGAAACGATTTGGGCAGTCACCAGTTTTCATTGCTTCTACTTTGATGGAAAATGGTGGACTTCCTGAAGGCACCAATACTCAATCACTAATTAAGGAAGCTATTCATGTTATAAGCATTGGCTATGAAGAGAAGACTGAATGGGGCAAAGAGATTGGGTGGATTTATGGCTCAGTCACAGAAGATATTTTAACAGGGTTTAAGATGCACTGCAGAGGATGGAAATCAGTATACTGCATGCCAAAGAGAGCAGCTTTCAAGGGATCTGCCCCAATAAATCTATCAGATAGGTTACACCAAGTTCTGAGATGGGCTCTTGGTTCAGTTGAAATTTTCCTTAGTCGCCATTGTCCATTATGGTATGGTTATGGAGGAAAGCTGAAATGGCTAGAGAGAATGGCTTATACCAATACCATTGTTTACCCATTAACTTCCATCCCTCTCCTTGCATACTGCATAATTCCAGCTGTGTGTCTTCTTACTGGAAAGTTCATCATCCCTACTTTGACCAACCTTGCTAGTGTATGGTTCATGGCTCTATTCATCTCCATCATTTTAACTGGTGTGCTGGAGCTTAGGTGGAGTGGGGTTAGCATTGAAGATTGGTGGCGCAATGAGCAATTTTGGGTCATTGGAGGAGTTTCTGCACACCTTTTTGCTGTATTTCAAGGTCTCCTTAAAGTTCTTGGAGGAGTAGACACCAATTTCACTGTCACAGCCAAAGCAGCAGATGATGCTGAATTTGGAGAACTCTATCTTTTCAAGTGGACTACACTTCTCATCCCTCCAACAACACTCATAATTTTGAATATGGTGGGAGTTGTGGCTGGAGTCTCTGATGCCATTAACAATGGATATGGTACATGGGGACCCTTATTTGGGAAGCTATTCTTTGCCTTTTGGGTCATTGTCCACCTTTATCCTTTCCTCAAAGGTCTCATGGGAAGGCAAAATAGGACTCCTACTATTGTGGTCCTATGGTCAATTCTTCTAGCATCAATTTTCTCATTGATTTGGGTCAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCAATACTCAAACAATGTGGAGTAGAATGCTAA 3132 0.4205 MASNSMAGLTTGSHSRFSHDSDEHRPAALQSASKVCRVCSDQIGYKEDGELFVACHVCGFPVCQPCYEYERSEGSQCCPQCSTRYKRHKGCPRVAGDEEEHFDADDFDDEFQIKNHHDDPDRKHNESEDYKEQKWHPNGQAFSSAGSVADKEFEREKEFYSNAEWEERVKKWKVRQEKKGLLNKEEGNDDQGQEDYLLAEARQPLWRKVPIPSSLINPYRIVIIMRLIILAFFLRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPITRETYLDRLSIRFEREGEPNLLAPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNIEPRAPEFYFNQKIDYLKDKVHPTFVKERRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKSGGGGSLFSRLYSKKKKMMGKNYVKKGYEPMFDLEEIEEGLEGYDKLEKSSLMSQKQFEKRFGQSPVFIASTLMENGGLPEGTNTQSLIKEAIHVISIGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERMAYTNTIVYPLTSIPLLAYCIIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGTWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01540 1043 Pfam Zinc-binding RING-finger 30 101 IPR027934 -
Rops2g01540 1043 FunFam Cellulose synthase 416 590 - -
Rops2g01540 1043 MobiDBLite consensus disorder prediction 1 15 - -
Rops2g01540 1043 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 202 1010 - -
Rops2g01540 1043 MobiDBLite consensus disorder prediction 111 135 - -
Rops2g01540 1043 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 405 591 IPR029044 -
Rops2g01540 1043 SUPERFAMILY RING/U-box 20 102 - -
Rops2g01540 1043 MobiDBLite consensus disorder prediction 1 24 - -
Rops2g01540 1043 CDD mRING-HC-C4C4_CesA 34 84 - -
Rops2g01540 1043 MobiDBLite consensus disorder prediction 111 147 - -
Rops2g01540 1043 Coils Coil 397 417 - -
Rops2g01540 1043 SUPERFAMILY Nucleotide-diphospho-sugar transferases 312 837 IPR029044 -
Rops2g01540 1043 FunFam Cellulose synthase 19 110 - -
Rops2g01540 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 110 IPR013083 -
Rops2g01540 1043 Pfam Cellulose synthase 299 1036 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01540 Rops-Chr2 22907350 22912585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01540 7 1043 Cell Wall Biosynthesis AT5G17420 66.667 0.0 1432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01540 K10999 - gmx:100780354 1912.12