Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01534 ATGGCAGAAGGTGTAAGCTCTCTACAAGATAGCTTTCCTCAAACTCTGCCAGACCCACAACCATCATCACTAATGGTCACAAACAGCAATAATAGCCTTGAAGAGAATTTCAGGCCTTCTGTGGAGGAGCTCTCCTATCACCCTCATCACAATCCACAGCATCCAGAAGATGTCTCCACATATGCAAATGGAGTCACTGTCACATCTTTAGACATCCCACATCCACAGCATCTGGTTTTGAACATGGGGAACTCCTATAACAACAACAACAACATGGATCCCCATTTGGTGCAAGAGGTCATTGATGATGCCCTTCCCTATCAGCAGTCCACTTGGGACCCCAGTGTTCAGGGATTACAAGATATGGGTTATGCAAATCACCCAGAACACCAACCACATGAACAGCAATTTCAGCAAATTGAGGCACAAAACTGCAGCCAAAGCTACAATCCCTCTTCCATACTGGACCCTCCTTACCTTTCACCAGATCTCATAAACCTTCTCCACTTACCCAGATGCTCAGCTTCATCTTTGCTCACCAATCCATCCACCATTTGCATCACAAACCCAACTCAGAAGACACCCAATTTTCAGAATCCAATAGCCTTTCTTGGAGACCTTCCTATAGGATCAGACAATACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTTCATTTGAACCTGCCTCCACAGCCTCCACCAGCCCTCAGAGAGCTGTTTCAGTCTCTCCCCCGTGGCTACAGCTTGCCAACCAGCTCCAGGAATGGTTCTCTTTTTGGTGGAGGGGATGAGATAGAGGGAGATGGGAGCCAGCATGACATGGGAGTGCTGGAATTCAATAGGGTCACAGCTTCTGTTGGCAAAGGAAGGGAAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGAAAATACAAAATCTTGAGGAGTCTTATCCCAAACCCCACCAAGATTGATAGAGCATCTGTGGTGGGTGATGCCATTGAGTATATAAGAGAGCTTATTAGAACAGTCAATGAGCTCAAATTATTGGTGGAGAAGAAAAGATATGGGAGGGAGAGGTGCAAGAGGCTCAAAACCGAAGAAGATGCTGCAGAGAGTTGTAACATAAAGCCTTTTGGTGATCCAGATGGGTGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAAGTGGATGTCCGGATTATCGATGATGATGTTACAATCAAACTCTTTCAGAGGAAGAAGATTAACTGCCTGTTGTTTGTCTCCAAGGTTCTGGATGAACTTCAATTGGAACTTCACCATGTTGCAGGAGGACATGTTGGCGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCATCAGTCTATGCAAGTGCAATAGCCAACAGGGTGATTGACGTTCTGGACACTCAGTACGCAGCAGCAGTTCCACATACAAGTAGCTATTAA 1476 0.4492 MAEGVSSLQDSFPQTLPDPQPSSLMVTNSNNSLEENFRPSVEELSYHPHHNPQHPEDVSTYANGVTVTSLDIPHPQHLVLNMGNSYNNNNNMDPHLVQEVIDDALPYQQSTWDPSVQGLQDMGYANHPEHQPHEQQFQQIEAQNCSQSYNPSSILDPPYLSPDLINLLHLPRCSASSLLTNPSTICITNPTQKTPNFQNPIAFLGDLPIGSDNTSASSVLYDPLFHLNLPPQPPPALRELFQSLPRGYSLPTSSRNGSLFGGGDEIEGDGSQHDMGVLEFNRVTASVGKGREGKATKHFATEKQRREQLNGKYKILRSLIPNPTKIDRASVVGDAIEYIRELIRTVNELKLLVEKKRYGRERCKRLKTEEDAAESCNIKPFGDPDGCIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDTQYAAAVPHTSSY* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01534 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 355 IPR036638 GO:0046983
Rops2g01534 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Rops2g01534 491 PANTHER TRANSCRIPTION FACTOR BHLH91 36 484 IPR045895 GO:0006355|GO:0048658
Rops2g01534 491 CDD bHLH_AtMYC1_like 298 362 IPR045896 -
Rops2g01534 491 SMART finulus 299 348 IPR011598 GO:0046983
Rops2g01534 491 MobiDBLite consensus disorder prediction 1 28 - -
Rops2g01534 491 Gene3D - 288 357 IPR036638 GO:0046983
Rops2g01534 491 Pfam Helix-loop-helix DNA-binding domain 296 342 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01534 Rops-Chr2 22829792 22831647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01534 162 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 44.101 1.42e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g01534 HLH 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01534 - - gmx:100782512 775.007