Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01532 ATGGAAAGAGAGGATTCTCCAGCAGCAGCTGTTGAAGGGTCTGGTGATGAACAAGATGCTCACAACTCAGACAAGGAAGAAAAGTACCATCGTCACTCTTTTCATCAGATAGCTATACTGGAAGAAGCATTCATGGAATGGCAACATCCAGGCGTCAACCGACGAAGTGAATTAGCCGAGGAGCTAGGGCTTAAGCCAAAACAAGTAAAATTTTGGTTTCAAAATAAGAGGACACAAATAAAGGCTCTAAGTGAGCGATCAGTTAACCATGCTCTTCGACTTGAGAATGAAAGGATAAAATCAGAAAATTCCATACTGAGAGGAACTTTGAAGAATCATGAGAGATTGTCCAAGCTTCTGGCAAGCACCAATGGGATAAATCCAACTCTACCTTTTACTCTTCCATCTTCACATGATCCCTCAGGAGGAATTTTGCTGAACCAAATCACTGAAATTCCTGGTCTTAATCAACAGATCCCTATTCTTGCTCATCCACATAATCAACAGATTCCTATTCTTGCTCATCCACATAATCAACATATTCCTATTCTTACTTCTGTCATTAATCAAGATATTCCTACTCTTATTCCTGTCCTTGATCAAAATATTTCTGCTATAACTCCTGCGCCTGATCGAAATATTCCAGCTCTTACTCTACCTGCTCATGATCAAGATATTTCAACTCTTACTTCTTCTGCTATTGATCAAGATTTTGTTCCTTTTATTTCTGCTCTTGATCAAGATAGTTTTGCCCATGATGAGGATATTCCTGCTCTTGATCTAGATTTTGATGCAGTTCATGAAATTTTGGATGATTATATGTGGCCCCAACCAGTGACCACAGTTACTGTAGATACGGAGAAAACATTAATGACAGAACGTGCAAATGCTGCTGTTGATGAATTAACGAGGCTTTTGAGGATGAATGAGCCCTTCTGGTTCAGGTCTATACTTGATGGAAGATTCATCCTTCAGCGTGAAACCTATGAAAAAATATTTCATAGGTTTAGTTGCTTAAAGGGACCTCATGCACGCATTGAATCATCAAAAGATTCACGTATAGTTAACATGAGTGGGACACAACTAGTTCACATGTTTTTAAATCCGATGAATGCAGAAATGCATATCCTTTCACCTATGATTCCAACTAGGGAATTCAACTTCCTTCGTTGCTGTAAGCAAATTGAAGTAGGTGTATGGACGATAGCAGACTTTTCATTTGATTCTTCAAAACATGACGCCTCTCTTTCTCACACTTGGAGGTTTCCCTCTGGATGCATAATTCAAGAAATTACTGATGGATCCTGCATGGTTTCTTGGGTCGAACACGTAGAAGTGGATGATAAGATCCAACCTGACCATCTTTTCGGAGAACTCATTTGTGACCATAGTGCATTTGGAGCAGAAAGATGGCTTGTGACACTTGAAAGAATGTGTGAGAGAATAACACGCGCCTCACTTGAAACCATACCTAATTGTGACACTGGAAGAGTGATCAATTCAATTGAAGGAAGGAGGAGTGTGATGCAACTTGCCCATCGCATGATTAAAACTTTTGGGAGAACACTTAACATGTTTGATAACAAGGACTTCTCATATTTAACTAATGTGAATATTGGAGGGGTTAGGGTATGTGTTCGCAATAACACAGAACCAGGCATGCCAAGAGGCATGATTGTCAGTGCTGTCACCTCCTTTTGGCTTCCTCACTCTCCTCAGAAGGTCTTCGATTTCTTGAAATATAATGGCAGAAGACTTGAGTGGGATGTTCTATGCAATGAAAATCCAGTGCAGGAGATTCAACGTATTTCAACTGGAACTGATCTTGACAACTGTATTACAATTCTTCGGCCTTTCATCCCTAAAGAGAATGATATGTTAATTCTACAAGAAAGTTATGCAGATCCTTTGGAATCTTTGTTGGTATATGCTCCTATAGATATAGCAACATTGAATATTGCAATTAGGGGAGAAGACTCTTCAACATTGCCTCTTCTTCCCTCTGGCTTTACCATATCAGGGGATGGTCGATCAAATGCTGTTGCTGAACAATATGGACAAGTTGGCAAATCAGGAGGTTCATTGATAACTCTTGTGTACCAAATATTGATGACTTGCAGTCAACCAGCAATAGAGAAGCAAGGCATGGAATATGTAGCTTTTGCCAAGACACTGGTAACCTCAGCAGTGGAGAAAATTAAAGTTGCTCTGAATTGCTCCAATTAA 2226 0.3971 MEREDSPAAAVEGSGDEQDAHNSDKEEKYHRHSFHQIAILEEAFMEWQHPGVNRRSELAEELGLKPKQVKFWFQNKRTQIKALSERSVNHALRLENERIKSENSILRGTLKNHERLSKLLASTNGINPTLPFTLPSSHDPSGGILLNQITEIPGLNQQIPILAHPHNQQIPILAHPHNQHIPILTSVINQDIPTLIPVLDQNISAITPAPDRNIPALTLPAHDQDISTLTSSAIDQDFVPFISALDQDSFAHDEDIPALDLDFDAVHEILDDYMWPQPVTTVTVDTEKTLMTERANAAVDELTRLLRMNEPFWFRSILDGRFILQRETYEKIFHRFSCLKGPHARIESSKDSRIVNMSGTQLVHMFLNPMNAEMHILSPMIPTREFNFLRCCKQIEVGVWTIADFSFDSSKHDASLSHTWRFPSGCIIQEITDGSCMVSWVEHVEVDDKIQPDHLFGELICDHSAFGAERWLVTLERMCERITRASLETIPNCDTGRVINSIEGRRSVMQLAHRMIKTFGRTLNMFDNKDFSYLTNVNIGGVRVCVRNNTEPGMPRGMIVSAVTSFWLPHSPQKVFDFLKYNGRRLEWDVLCNENPVQEIQRISTGTDLDNCITILRPFIPKENDMLILQESYADPLESLLVYAPIDIATLNIAIRGEDSSTLPLLPSGFTISGDGRSNAVAEQYGQVGKSGGSLITLVYQILMTCSQPAIEKQGMEYVAFAKTLVTSAVEKIKVALNCSN* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01532 741 SUPERFAMILY Bet v1-like 523 707 - -
Rops2g01532 741 PRINTS Lambda-repressor HTH signature 54 63 IPR000047 GO:0003677
Rops2g01532 741 PRINTS Lambda-repressor HTH signature 63 79 IPR000047 GO:0003677
Rops2g01532 741 CDD homeodomain 28 81 IPR001356 GO:0003677
Rops2g01532 741 Pfam START domain 369 481 IPR002913 GO:0008289
Rops2g01532 741 Pfam Homeodomain 28 81 IPR001356 GO:0003677
Rops2g01532 741 SMART START_1 293 481 IPR002913 GO:0008289
Rops2g01532 741 Gene3D - 326 455 IPR023393 -
Rops2g01532 741 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Rops2g01532 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 368 738 IPR042160 -
Rops2g01532 741 SUPERFAMILY Homeodomain-like 18 82 IPR009057 -
Rops2g01532 741 SMART HOX_1 25 87 IPR001356 GO:0003677
Rops2g01532 741 ProSiteProfiles START domain profile. 284 484 IPR002913 GO:0008289
Rops2g01532 741 SUPERFAMILY Bet v1-like 285 482 - -
Rops2g01532 741 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Rops2g01532 741 Gene3D - 13 97 - -
Rops2g01532 741 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01532 Rops-Chr2 22785169 22797313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01532 261 739 Homeobox Transcription Factor Family AT1G17920 38.815 2.01e-106 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops2g01532 START 7.9e-19 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01532 K09338 - gmx:100783586 588.571