Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01524 ATGGCATCATCCCAGGTTGAAAACGCTTCTTCTTTGCCATTTGGTTGTGTTTTGACGGATCATAACCATCGTGATGCATGCACTACAACACGTGCTTCTTTCCATAAAAACATCGTTAGAGACCATGACACTCAAAAACCAAACAGCAATTCTGAAACTTGGGTCTCAAGAAATTCCAAGAAAAAACTCGGAAGCCTATGTTTCACTAGAAAACTTCATAATATCTTCAGTGACAAAGATGATTCTTCATTGTCTGCGCTGGTTAGCCCGAGGCACTCACGGATCATTGATCGATGGGCCGCAAGACAAGCTAAAGACGTGGTAACAACACTTGAGAATGGGGTTGAGGTGTTGGAAAATTTTCGTTCAAGGTCATCTAGTTTCAATTATAGGAGGGAAGTGTCCCCTCCTCATTCTGATGGTTCCTCTGAAAGTGAAATCTCAAATCTAGGGGCTTCTTCCCTTGTTCAGATATGGGAAAAGAGGCTCAAGAAATCCAACTCCACCAAACCAAATGCACCAGCTTCACCTGGAAGAACTAGTCTTGATGATAATGCAGTATATTCTGTGGAAGAACAATGCAGGGTCTCAGAAGAAAGAGAATCTGTTGATGAACCTCAAAGCAATGAGGAATCATCCCCAGATTGGGAATATGATAAAACAATACCAAGTGATCAATCATGTTCATTAAAAGTGCAGAGTTCAGATGAGAGGGGCAGGGTTGCTGATATTATCAAGAGACTCACCGTTACAAATCAAATGCAAAGTTCACTGTTACAAAGCGATGACAATGATCACGAGGTGTGTAGTAGTAGTGACAGTGCTTCCACACCAAAACAACAAGAACATAAAGCTTTTGCTCAAGTCATCAGTTGCCCGCGTATTAGGGGGCGCCAAGCATTCAACGATTTGATCATGCAGTTTGAGAGTGACCGGCAAAGAGAACTCAGCAATCTTGCACAGCGAGGTGCAGTTTCCAAGTTCACACAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTACAACGTGGAGTAGCAGCTTCTGATCAATCAGGCCATAAATCAACAGCACCTGAAGTGAACAAACAACAAAAAGGATCAGGAATTATGCAACTAAGGGGAAGATTTAACACAGGGGATGAACATAGAACTCCATCCCTGGCAGAAGTATCTGATCCAAGAAGTCCTGGTAGGGAGATAGCAAGCAGCACCACACAAATGGATGACTTTCTCACCTCTAATCAGCACAGCAAAGACACTCACTGCAAGACAGTTTACAACACTGGCATTCACTGTAAAGAAACTACAAAAAACTCAGTGTCTCAAACTAGTGAAGGTAGCAAAGAAGAAGCACATCCAAGTTCAGATATCACGTTCCAAGGAACATTCTTTGAAGCTAAAAATAATGACCCGAAAGAAACTGTTGGAGCATCTTCTTCCTTGGCTGATTCAAATGCAAATGAGATGGTAGATAAGGTAGAGGCAAGTGACCAGCAATATGCTACTGCTGAAACCAGTTATGATGAGATAGTAGAAGAGGAAGAGACCAGCGACCAGAATTATGATGAAGCTCGCTATGACTGGATCAGTCATATTTCTAGGCCTAGGAGCTATTGGGAAGAACGAAGGCAAGAATGGTATAGGGAAATGCTTGACTTTGGTTCAAAAAATGATGAGATACAAAAGCTCCTTGAAAGAAGAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGCGAAACGATGGATAGACTGATGAAGTCTCATATGGGAACACAAACACACCTAGTCAATAGTCAACATGATATGGAAGACCAAGAAGGGAGTATGGACCAGTTGATGGCATTTTTTCAAGATCGCTTGCGTTTCAGAGGCAGTCTTCAAGAACATAAAAGAGATAGAGGGGAGGAGGAAGAGGTGAGGAGAAATGAGGAAGAGGAAGAGGAAGAGAAGAGCATCATTAGTGGTTCAGATCATGAACTTGGTGATTATTTCAATCAATCATCATCATCATCAATGCTTACATCTTCCCCCTCAACATGGGGTTATAGGGACAATGATGCTGGGGATGATTCTGATAGAGTTGTATCTGTATCCTCACTACTACCTTCTCAATCTCAGTCTTTCTATCAAGATAATAGGCAGTACTCTTCATCCACAAATCATCATTCAATTGAAATGGAATTCATATATGATTTGCGTGGGCAAATGGAACAACTTTTTCATGAGATGTCTGAGCTAAGGAAATCAATAAAGAGCTGCATGGACATGCAGATGCAATTACAACAATCCAATAACCAAGAGGTTCACACAGTTAAAAAAGAAGAAAGGAAGTTCCATAACAAGGCACCAAAGAAAGGCAACTGTTGCATTTGCTATGAGAATAAAGTAAACTCGGTTTTATACAGATGTGGGCACATGTGTGCATGTCTCAAGTGTGCCAATGAGTTGCAATGGAACAGTGGAAAATGTCCAATATGTCGAGCTCCAGTAATAGATGTTGTTCGAGTATATACTGACACAGAATCTTTCATGGTGGAGAGAGTCTAG 2553 0.4136 MASSQVENASSLPFGCVLTDHNHRDACTTTRASFHKNIVRDHDTQKPNSNSETWVSRNSKKKLGSLCFTRKLHNIFSDKDDSSLSALVSPRHSRIIDRWAARQAKDVVTTLENGVEVLENFRSRSSSFNYRREVSPPHSDGSSESEISNLGASSLVQIWEKRLKKSNSTKPNAPASPGRTSLDDNAVYSVEEQCRVSEERESVDEPQSNEESSPDWEYDKTIPSDQSCSLKVQSSDERGRVADIIKRLTVTNQMQSSLLQSDDNDHEVCSSSDSASTPKQQEHKAFAQVISCPRIRGRQAFNDLIMQFESDRQRELSNLAQRGAVSKFTQRGRIQSLLRLRLLQRGVAASDQSGHKSTAPEVNKQQKGSGIMQLRGRFNTGDEHRTPSLAEVSDPRSPGREIASSTTQMDDFLTSNQHSKDTHCKTVYNTGIHCKETTKNSVSQTSEGSKEEAHPSSDITFQGTFFEAKNNDPKETVGASSSLADSNANEMVDKVEASDQQYATAETSYDEIVEEEETSDQNYDEARYDWISHISRPRSYWEERRQEWYREMLDFGSKNDEIQKLLERRTVSTFLSSDFRETMDRLMKSHMGTQTHLVNSQHDMEDQEGSMDQLMAFFQDRLRFRGSLQEHKRDRGEEEEVRRNEEEEEEEKSIISGSDHELGDYFNQSSSSSMLTSSPSTWGYRDNDAGDDSDRVVSVSSLLPSQSQSFYQDNRQYSSSTNHHSIEMEFIYDLRGQMEQLFHEMSELRKSIKSCMDMQMQLQQSNNQEVHTVKKEERKFHNKAPKKGNCCICYENKVNSVLYRCGHMCACLKCANELQWNSGKCPICRAPVIDVVRVYTDTESFMVERV* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01524 850 Coils Coil 628 648 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 165 235 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 350 373 - -
Rops2g01524 850 CDD mRING-HC-C3HC5_NEU1 787 839 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 219 234 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 129 148 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 258 282 - -
Rops2g01524 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 849 IPR013083 -
Rops2g01524 850 MobiDBLite consensus disorder prediction 438 458 - -
Rops2g01524 850 PANTHER BNAC05G24000D PROTEIN 1 841 - -
Rops2g01524 850 SMART ring_2 790 828 IPR001841 -
Rops2g01524 850 MobiDBLite consensus disorder prediction 168 187 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 348 403 - -
Rops2g01524 850 Pfam Zinc finger, C3HC4 type (RING finger) 787 834 - -
Rops2g01524 850 SUPERFAMILY RING/U-box 770 835 - -
Rops2g01524 850 ProSiteProfiles Zinc finger RING-type profile. 790 829 IPR001841 -
Rops2g01524 850 MobiDBLite consensus disorder prediction 193 218 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 495 520 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 662 684 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 628 698 - -
Rops2g01524 850 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01524 Rops-Chr2 22603057 22606700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01524 790 838 C3H Transcription Factor Family AT3G06140 38.776 3.32e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01524 - - aprc:113855868 956.436