Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01511 ATGGTAGCCCAACAGCCACAAGTTCAGCCGCAGCTTCAACCTCAACAGCCTGCACCCTCTGCTCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTATACTTTCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGCGAGTATGCTCGGGTCAATCCTAGGGATTGCTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACCACCGGCAGCCGCTGCTGGTGGACCATCTGCACCCCCACCACAGATTGTTACAACACCTGTATCACATGCACCTGCACCTTACAATTCTAGTAAACAAGCTGTCCCTTGCATTTTCTTCCAAAAAGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCAAATCCTAACACTGGCAATAAAGTAGCTACTCAGGGCCCGATGACCAGCCAAGGAGCTGAGAATCCAGGTTTTAAGAAGCCTTTTGGCGGCATTGAAAAGTGTACACAAGAAAGGATAACTTCCCAAGGAAATGTTGCAAGGTCTGTTGGAGGTGCTGAGGCTAAACCTACCCTAAAAGTTGAAACTGCTCCACGGAAAAATACGTTTGAATTGGAGAAGCATGTGCCGCCACCACCTACAGGATTTGATAATGAGACTTCAAGATTTAAGATAACAAGTTCTCCACCAGTGACCAATGGCCCCACTGTAGCCCGATCTAATCGTGTGCATCAAGATCATAGTTTCCATGGTGGTAAGGACAGTGATGAGTTTCTCAGAGAGTCCTCCCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAGATGAAAGAAACTTAGACTCTTTGAATGAGTATGATATAAGACATTCTGCTGATTATAGTTTGGCAGCTGATATTGATCGAGAAAGATTTCGTGGGCCTCAAGGTTATGAGTCATATGATCACATGCAAGAGCCATATGTTTGGGACCAGCATAGAAAGGCATCAGCCCATTTAGAAAGAAGAACTCACCGCAGATCTGGCAGTCCTGACAATGTTGAGGTCTCCGATCTCCGACACCATTTATCCAAGCGTAGGAAGGGCAATGGTTTGAAATCTGTTGTCACTCATGATTATGCCCTTGAGAGCCATGGGGAGGAACAAAGTCACCGGTCCTTCTCTCGCAAGGATTCACAACAGTTACCTTTAAATGAGAGCTCCCTCAGTAATCGTTTCCGAGGCAGAATAAAACTTCCAGCAAATGGTGGTGATGGTCACCTAGAGAGGGATTTAGACAGAGGAAGAATTAGGGGTAGATTGTCATCTGGAAGGTTGCCTGCTCCTTCCGAGAGAAGGATCCAAGATAGAACAAGAGGAAGATTGCAAGATGATGAGAGGAGGAACTTCAGAGATCGAACGTTTGGGAGAGAACTAATGGGAGACAGAAGTGGTTTTGCTGGACCAAAAAGTCTTGCTGAACTTAAAAATGGGAGGAACACTGTGAACAAGGACCAACAATCGCTTGGAAAAAGGAAAAGTTTAAGGGATTACCAACAATCTGAAGATGATCTTCTGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAGAGAGGAGTTGGTGCTGGGGCAGCGTCCCAGAGTGGAAAATCATCTGATGATAAGAATAGAGAAATTACCTATAGCTCAGACACACAAAATGGAGCATTGCCTGAGACTAAGGAAGATGTCAAGAGCCACTTGCAAAATAATGAAGAAGAATCTACTGATGCAGTTGGAAGAGACATTGATAATACTAATGCAACTCACGGTCAATCATCAGAGGATGGAATGATCTATGATGAAGCAGGGGAGGATCAGGAGTATGAAGGTGATGATCAGAGAGATGGGGACTATGATTATGAGCAAGGTGATGAGGGGGAGTATTACTATGAACAAGTTGATGAGGGTGAAAATCAAGAGCAAGAATACATGGAGGATGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGCCATTCCTACCTAA 2094 0.4436 MVAQQPQVQPQLQPQQPAPSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTPPAAAAGGPSAPPPQIVTTPVSHAPAPYNSSKQAVPCIFFQKGLCLKGDRCAFLHGPNPNTGNKVATQGPMTSQGAENPGFKKPFGGIEKCTQERITSQGNVARSVGGAEAKPTLKVETAPRKNTFELEKHVPPPPTGFDNETSRFKITSSPPVTNGPTVARSNRVHQDHSFHGGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKDERNLDSLNEYDIRHSADYSLAADIDRERFRGPQGYESYDHMQEPYVWDQHRKASAHLERRTHRRSGSPDNVEVSDLRHHLSKRRKGNGLKSVVTHDYALESHGEEQSHRSFSRKDSQQLPLNESSLSNRFRGRIKLPANGGDGHLERDLDRGRIRGRLSSGRLPAPSERRIQDRTRGRLQDDERRNFRDRTFGRELMGDRSGFAGPKSLAELKNGRNTVNKDQQSLGKRKSLRDYQQSEDDLLFEGPKPLSEILKEKKRGVGAGAASQSGKSSDDKNREITYSSDTQNGALPETKEDVKSHLQNNEEESTDAVGRDIDNTNATHGQSSEDGMIYDEAGEDQEYEGDDQRDGDYDYEQGDEGEYYYEQVDEGENQEQEYMEDEDGDDFAKKIGAIPT* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01511 697 ProSiteProfiles Zinc finger C3H1-type profile. 57 83 IPR000571 GO:0046872
Rops2g01511 697 MobiDBLite consensus disorder prediction 468 497 - -
Rops2g01511 697 SUPERFAMILY CCCH zinc finger 121 145 IPR036855 GO:0046872
Rops2g01511 697 MobiDBLite consensus disorder prediction 238 254 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 255 272 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 593 615 - -
Rops2g01511 697 Pfam Zinc-finger containing family 27 81 IPR041686 -
Rops2g01511 697 ProSiteProfiles Zinc finger C3H1-type profile. 120 147 IPR000571 GO:0046872
Rops2g01511 697 Gene3D - 112 182 - -
Rops2g01511 697 Gene3D - 18 83 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 398 413 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 238 272 - -
Rops2g01511 697 FunFam Zinc finger CCCH domain-containing protein 17 20 83 - -
Rops2g01511 697 ProSiteProfiles Zinc finger C3H1-type profile. 26 55 IPR000571 GO:0046872
Rops2g01511 697 MobiDBLite consensus disorder prediction 441 458 - -
Rops2g01511 697 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 23 693 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 1 24 - -
Rops2g01511 697 SMART c3hfinal6 59 82 IPR000571 GO:0046872
Rops2g01511 697 SMART c3hfinal6 27 54 IPR000571 GO:0046872
Rops2g01511 697 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Rops2g01511 697 MobiDBLite consensus disorder prediction 414 430 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 1 23 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 354 661 - -
Rops2g01511 697 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 146 IPR000571 GO:0046872
Rops2g01511 697 MobiDBLite consensus disorder prediction 634 661 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 527 542 - -
Rops2g01511 697 MobiDBLite consensus disorder prediction 354 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01511 Rops-Chr2 22321581 22325199 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g01511 zf-CCCH_3 6.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01511 - - gmx:100787836 905.205