LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g01460	ATGATTGGAAGTAAAGATCTTCTTCGTAATGGTGGTGTTGACTCTGACGGTGAGAACTCTAGGAGCAAGCTTTCAAGGCACAATTTTGAGCCTAGCAAGGAATACCCAGATGAGAAACTGGGTTACCCAGATAAGAAAGGTGTTGAATTTCTAAGAGATTCAGATGTGGGTTGTGGTGATGGGATTCTTCAGTCAAAACCCACCACCAAGGTTGTTGGTAGCTCAGGGTTGCAAGAGTTGACCCTGAGCTACCTTTGTGACAACCCAAAATTGAGTCTTGTTGAGAAAGAGATTCCTGGTAGTAAAAGCTTGCTGAATTCCTTGGAAAAAATGAGCCACAAAGGTAAAGAGGTTGTGGTTTCTGAGAATTCAAATCATGATGGGAAATGGGTGGAAAGAGATTTCCTTAGCTTGAGTGAGACCAGAGAGGATTCTTCAAAGCGATCTCTTGAAGAAGATGTTGAAAGGGAGAGTAACAGGGAGAAGAAGCCAAAACTTGAGACACTTAATCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCTCTCACAGCTTCAAACGCCTTACAAAATGGTGATCAACAAATTAGGACTAAGCCTAGCAACAAGCCATCAACTACTCACACTTCGTATTCAAATGATTATACAGCAGCTTCTTTGTCTTACTCTTATTCTCACCCTTTCTCACACAACCCAAGTTGCTCACTCACCCGCAATTCAACTGATTTTGACTATTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGGACTAATGGTTCCGTTCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGTCCAATCATGGTGGTGGTGGTCTTAGTTCCTTCATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAATCATTCTTTTTTCCCTTCAGAATTGCCTGCCAGACCAAGATTGGAGGCTCAGTCAGGGGACTCAAGGGGAAGGAATTCTGAGAATCTGAGAGTCTTGGAAGGTTTAGATGGTGGGAAGATAAGGAAGCCTTCTAGACCAGAAAGAATTGTCAGGGAAATTGTTTCTGAGTCTATACCTATCATGGCATTGACAATTCAGGAGCTCACTGATGAAGTCATAGCATCAACCAAGGAATACTTGAAGAATCTCATTGAGAAGCATGAGAAGAAAGATGAATTGGTCAGTCTTCAAAACAGGCTTGAGAGAAGATCTGACCTTACCAACGAGACTCTTGCAAAGTGCAATAAAGTGCAATTAGAGATTTTATTGGCTGTCAAGATGGGGTTAACAAGCTTCTTATATGGTAAAGTTCACTTATCTGAGATGGTAGAGATTTTCTTGTATAAGAGATGTAGAAATGTGACATGCAAGCATGTGCTCCCTGTTGATGACTGTGAATGCAAGATTTGCTCAGGAAATAAAGGGTTTTGCAGCTCTTGCATGTGTCCTATCTGTTTAAACTTTGATTGTGCTAATAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCCCACTGGTGCCATGCTGCATGTGGCATCCAGAGGAATCTCATCAAACCTGGGCCTAGTTTGAAGGGTATGCAGTTTCATTGTATTGGTTGTGGACATGCCTCAGAAATGTTTGGATTCGTTAAAGATGTTTTCACTTATTGTGCAAAGGATTGGGGCCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGAAAGATTTTCGGGGGAAGTGAAGATCGCAGAGGGAAGGAATTATATTTTAAAACTGATGACATGCTATTAAAGCTTCAAACTAAAATGGTTTCTCCTTTGGATGCCTGCAATTATATCATTCAATTTTTCAACTATGCGGATGGCATGTCGGATTTTCCTGCTTCTGGTATTTCTTCCAAGGATTTGGCAGCTTCTCAAGCTAACCTTCCAAAAGATACACCATCCCTTTCAAAATCTAATTCTCTAATACCAAAATATGCGTATGACATGAGCTATTCAAGGTCACATTCTGATGCCCTCTCGAATGATCTTCATCAGAAAGACCTCAAAGCTTCCCTCTTAAGTGAACTAAAAAATGAGTCTGATTTCCAATTGGGGGCTTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATTAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAAGCAGATGAAGCAAGGAGAGAAGCAGAAGGGTTCCAGAAGATGATAAGGACAAAGACTGCACAAATGGAAGAAGAGTATGCAGCAAAGCTTGCCAAACTGTGCTTGCATGAGACTGAGGAAACACAGAGGAAGAAATCGGATGAACTGAAAGTCTTGGAGAATTCCTATGTTGATTACTATAAAATGAAAAAGAGAATGCAAGATGAGATTGATGGGTTATTGCAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA	2427	0.4096	MIGSKDLLRNGGVDSDGENSRSKLSRHNFEPSKEYPDEKLGYPDKKGVEFLRDSDVGCGDGILQSKPTTKVVGSSGLQELTLSYLCDNPKLSLVEKEIPGSKSLLNSLEKMSHKGKEVVVSENSNHDGKWVERDFLSLSETREDSSKRSLEEDVERESNREKKPKLETLNLSLALPDVSLSLTASNALQNGDQQIRTKPSNKPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGGLSSFMQGNSQYKTTSSDNHSFFPSELPARPRLEAQSGDSRGRNSENLRVLEGLDGGKIRKPSRPERIVREIVSESIPIMALTIQELTDEVIASTKEYLKNLIEKHEKKDELVSLQNRLERRSDLTNETLAKCNKVQLEILLAVKMGLTSFLYGKVHLSEMVEIFLYKRCRNVTCKHVLPVDDCECKICSGNKGFCSSCMCPICLNFDCANNTCSWIGCDVCSHWCHAACGIQRNLIKPGPSLKGMQFHCIGCGHASEMFGFVKDVFTYCAKDWGLETLMKELDCVRKIFGGSEDRRGKELYFKTDDMLLKLQTKMVSPLDACNYIIQFFNYADGMSDFPASGISSKDLAASQANLPKDTPSLSKSNSLIPKYAYDMSYSRSHSDALSNDLHQKDLKASLLSELKNESDFQLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQKMIRTKTAQMEEEYAAKLAKLCLHETEETQRKKSDELKVLENSYVDYYKMKKRMQDEIDGLLQRMEATKQQWV*	809

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g01460	808	CDD	PHD_OBE1_like	482	535	IPR047578	-
	Rops2g01460	808	MobiDBLite	consensus disorder prediction	19	44	-	-
	Rops2g01460	808	MobiDBLite	consensus disorder prediction	288	330	-	-
	Rops2g01460	808	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	404	419	IPR004082	-
	Rops2g01460	808	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	443	464	IPR004082	-
	Rops2g01460	808	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	704	724	IPR004082	-
	Rops2g01460	808	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	743	765	IPR004082	-
	Rops2g01460	808	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	489	509	IPR004082	-
	Rops2g01460	808	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	365	387	IPR004082	-
	Rops2g01460	808	MobiDBLite	consensus disorder prediction	1	44	-	-
	Rops2g01460	808	Pfam	Coiled-coil region of Oberon	669	797	IPR032535	-
	Rops2g01460	808	MobiDBLite	consensus disorder prediction	141	163	-	-
	Rops2g01460	808	MobiDBLite	consensus disorder prediction	189	211	-	-
	Rops2g01460	808	Coils	Coil	710	744	-	-
	Rops2g01460	808	Pfam	PHD - plant homeodomain finger protein	452	570	IPR032881	-
	Rops2g01460	808	MobiDBLite	consensus disorder prediction	288	305	-	-
	Rops2g01460	808	Coils	Coil	758	778	-	-
	Rops2g01460	808	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	109	807	IPR004082	-
	Rops2g01460	808	Coils	Coil	786	806	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g01460	Rops-Chr2	21395547	21399905	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g01460	452	636	PHD Gene Family	AT5G57380	25.946	1.09e-09	60.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g01460	-		-	gmx:100820216	1374.38